View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_low_11 (Length: 210)
Name: NF0377_low_11
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16566699 - 16566797
Alignment:
| Q |
1 |
agatgcacatttgtcagttgacatttnnnnnnncaacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatgct |
99 |
Q |
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| T |
16566699 |
agatgcacatttgtcagttgacatttaaaaaaacaacttatagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatgct |
16566797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 6415817 - 6415922
Alignment:
| Q |
35 |
aacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaagatatccatg--ctctgagttttgtgacgttttttaccacatgtttc |
132 |
Q |
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| T |
6415817 |
aacttacagagttcaaaatttcagcacaaccctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttc |
6415916 |
T |
|
| Q |
133 |
actccc |
138 |
Q |
| |
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|||||| |
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| T |
6415917 |
actccc |
6415922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 16569399 - 16569440
Alignment:
| Q |
101 |
tgagttttgtgacgttttttaccacatgtttcactccctcct |
142 |
Q |
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| T |
16569399 |
tgagttttgtgaggttttttaccacatgtttcactccctcct |
16569440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 13470982 - 13470873
Alignment:
| Q |
35 |
aacttacagagttcaaac--tttcatcacaacattttcagaatactagtaaagaagatatccatgctctg--agttttgtgacgttttttaccacatgtt |
130 |
Q |
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|||||||||||||||||| ||||| ||||||| || | ||||||||||||||||||||||||||||| || | |||| ||| | ||||||||||| |
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| T |
13470982 |
aacttacagagttcaaacactttcagcacaacacttccgaaatactagtaaagaagatatccatgctctcttagctgtgtgcagttctctaccacatgtt |
13470883 |
T |
|
| Q |
131 |
tcactccctc |
140 |
Q |
| |
|
|||||||||| |
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|
| T |
13470882 |
tcactccctc |
13470873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 51764688 - 51764635
Alignment:
| Q |
35 |
aacttacagagttcaaactttcatcacaacattttcagaatactagtaaagaag |
88 |
Q |
| |
|
|||| |||||||||||||||||| |||| || ||||| |||||||||||||||| |
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| T |
51764688 |
aactaacagagttcaaactttcagcacagcactttcaaaatactagtaaagaag |
51764635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 10170325 - 10170285
Alignment:
| Q |
36 |
acttacagagttcaaactttcatcacaacattttcagaata |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10170325 |
acttacagagttcaaactttcagcacaacactttcagaata |
10170285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 10177850 - 10177810
Alignment:
| Q |
36 |
acttacagagttcaaactttcatcacaacattttcagaata |
76 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
10177850 |
acttacagagttcaaactttcagcacaacactttcagaata |
10177810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 10614476 - 10614510
Alignment:
| Q |
67 |
tttcagaatactagtaaagaagatatccatgctct |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
10614476 |
tttcagaatactagtaaagaagatacccatgctct |
10614510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 19468746 - 19468708
Alignment:
| Q |
34 |
caacttacagagttcaaactttcatcacaacattttcag |
72 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
19468746 |
caacttacagagttcaaactttcagcacaacactttcag |
19468708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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