View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_low_2 (Length: 455)
Name: NF0377_low_2
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 47 - 450
Target Start/End: Complemental strand, 26495320 - 26494917
Alignment:
| Q |
47 |
cacagatatacacatatatttacaccatagttgattgatgttgtaaactaaccttacattgctatatttgtatcattgctctatggcatcaatgtatcat |
146 |
Q |
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|||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26495320 |
cacagacacacacatatatttacaccatggttgattgatgttgtaaactaaccatacattgctatatttgtatcattgctctatggcatcaatgtgtcat |
26495221 |
T |
|
| Q |
147 |
ttatatctaaatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcatgatcatgtcctataaaatgtctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26495220 |
ttatatctaaatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcctgatcatgtcctataaaatgtctc |
26495121 |
T |
|
| Q |
247 |
caattgttgaatctagttcctgagagaaatttgattttctagtggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcct |
346 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26495120 |
caattgttgaatctaattcctgagagaaatttgagcttctagtggatatttcatcaccattgtaaattcctgtttttctgtcaaatcaacattacttcct |
26495021 |
T |
|
| Q |
347 |
ggtaatgaagtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctctctg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26495020 |
ggtaatgaagtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctg |
26494921 |
T |
|
| Q |
447 |
ctcc |
450 |
Q |
| |
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|||| |
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|
| T |
26494920 |
ctcc |
26494917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 289 - 450
Target Start/End: Complemental strand, 26507105 - 26506944
Alignment:
| Q |
289 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcctggtaatgaagtcttccactcaaagttcaaaaccaaattagca |
388 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||| | |
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| T |
26507105 |
tggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacattactttctggtaatgaagtcttccattcaaagttccaaactaaatttgtc |
26507006 |
T |
|
| Q |
389 |
acaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctctctgctcc |
450 |
Q |
| |
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|||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
26507005 |
acaaagtactctacatggagcattgccaagttataggcaggacaaatcctccttcctgctcc |
26506944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 41127405 - 41127340
Alignment:
| Q |
377 |
accaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctc |
442 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| || || ||||| |||||||||| |||||| |
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| T |
41127405 |
accaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctc |
41127340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 2294295 - 2294246
Alignment:
| Q |
289 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat |
338 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||| ||||||||||||| |
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|
| T |
2294295 |
tggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacat |
2294246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 2310626 - 2310577
Alignment:
| Q |
289 |
tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat |
338 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||| ||||||||||||| |
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|
| T |
2310626 |
tggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacat |
2310577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 2303842 - 2303790
Alignment:
| Q |
358 |
cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagca |
410 |
Q |
| |
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|||||| || || ||| ||||||||||||| ||||| |||||||||||||||| |
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| T |
2303842 |
cttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagca |
2303790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 15176287 - 15176327
Alignment:
| Q |
359 |
ttccactcaaagttcaaaaccaaattagcaacaaagtattc |
399 |
Q |
| |
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||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
15176287 |
ttccactcaaaattcaaaacaaaattggcaacaaagtattc |
15176327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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