View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_low_5 (Length: 284)
Name: NF0377_low_5
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 36495483 - 36495731
Alignment:
| Q |
30 |
ctatcatttcaagccctaaatcattcatagtctccattaatttcttgaaccctcctctcttgttctcaaagatcatcttaacccatagcttatttccatc |
129 |
Q |
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| T |
36495483 |
ctatcatttcaagccctaaatcattcatagtctccattaatttcttgaaccctcctctcttgttctcaaagatcatcttaacccatagcttatttccatc |
36495582 |
T |
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| Q |
130 |
cattttttccacttgaacctcttcctatagaaagcaaccacacaaagattgcttattaatagtagttattgataaaaattcatttagttaattcatgaaa |
229 |
Q |
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| T |
36495583 |
cattttttccacttgaacctcttcctatagaaagcaaccacacaaagattacttattaatagtagttatagataaaaattcatttagttaattcatgaaa |
36495682 |
T |
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| Q |
230 |
gaaataatttatataaaatctgtatcccccattttttcatctctgctgc |
278 |
Q |
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| T |
36495683 |
gaaataatttatataaaatctgtatcccccattttttcatctcttctgc |
36495731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 36478202 - 36478262
Alignment:
| Q |
119 |
ttatttccatccattttttccacttgaacctcttcctatagaaagcaaccacacaaagatt |
179 |
Q |
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| T |
36478202 |
ttatttccatccattgtttccacttgaacctctttctatagaaagtaaccacacaaagatt |
36478262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 36466833 - 36466931
Alignment:
| Q |
65 |
attaatttcttgaaccctcctctcttgttctcaaagatcatcttaacccatagcttatttccatccattttttccacttgaacctcttcctatagaaag |
163 |
Q |
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| T |
36466833 |
attaatttgttgaaccttcctcttttcttctcaatgagcaacttaatccatagcttattcccatcaacttttgctacctgcacctcttcctatagaaag |
36466931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 24055953 - 24055999
Alignment:
| Q |
142 |
ttgaacctcttcctatagaaagcaaccacacaaagattgcttattaa |
188 |
Q |
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| T |
24055953 |
ttgaacctcttcctatagaaagtaaccacacaaagattactaattaa |
24055999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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