View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0377_low_6 (Length: 281)

Name: NF0377_low_6
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0377_low_6
NF0377_low_6
[»] chr2 (23 HSPs)
chr2 (56-240)||(39222854-39223038)
chr2 (56-240)||(39192330-39192514)
chr2 (56-240)||(39198010-39198194)
chr2 (56-188)||(39388985-39389117)
chr2 (56-188)||(39161905-39162037)
chr2 (56-188)||(39207157-39207289)
chr2 (57-162)||(39215721-39215823)
chr2 (158-240)||(39389129-39389211)
chr2 (165-240)||(39161811-39161886)
chr2 (165-240)||(39207308-39207383)
chr2 (53-137)||(39370243-39370327)
chr2 (165-240)||(39215601-39215676)
chr2 (74-151)||(39421677-39421754)
chr2 (164-240)||(39381509-39381585)
chr2 (105-153)||(39473285-39473333)
chr2 (169-240)||(39468308-39468379)
chr2 (166-240)||(39459221-39459295)
chr2 (56-153)||(39381338-39381435)
chr2 (90-131)||(39468447-39468488)
chr2 (97-145)||(39137997-39138045)
chr2 (92-153)||(39152694-39152755)
chr2 (92-145)||(39459379-39459432)
chr2 (111-155)||(39397731-39397775)
[»] chr6 (2 HSPs)
chr6 (61-155)||(16113416-16113510)
chr6 (169-240)||(16113268-16113339)
[»] chr5 (2 HSPs)
chr5 (53-158)||(33561107-33561212)
chr5 (158-222)||(33561001-33561065)
[»] chr7 (1 HSPs)
chr7 (98-145)||(19807947-19807994)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 39223038 - 39222854
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39223038 atcatcatcattaagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatatttttt 39222939  T
Q  156 ccttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39222938 ccttgacacaggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctct 39222854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 39192330 - 39192514
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||||||||| |||||||| |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||    
T  39192330 atcatcatcattaagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatacttttt 39192429  T
Q  156 ccttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39192430 ccttgacgcaggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct 39192514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 39198010 - 39198194
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||||||||| |||||||| |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||    
T  39198010 atcatcatcattaagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatacttttt 39198109  T
Q  156 ccttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39198110 ccttgacgcaggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctct 39198194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 39388985 - 39389117
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||  |||||||||||||||||||| |||||||||||  |||||| |||||||||    
T  39388985 atcatcatcattaagaggaacagttgtaaaaaaattctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatatttttt 39389084  T
Q  156 ccttgacacaggatccttgacttgtccttcaaa 188  Q
    ||||||| | || ||||| | |||||| |||||    
T  39389085 ccttgactcgggctcctttatttgtccatcaaa 39389117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 39162037 - 39161905
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||| ||||||||||  ||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  39162037 atcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatatttttt 39161938  T
Q  156 ccttgacacaggatccttgacttgtccttcaaa 188  Q
    ||||||| |||| ||||| | |||||| |||||    
T  39161937 ccttgactcaggctcctttagttgtccatcaaa 39161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 39207157 - 39207289
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||||||||| ||||||||||  ||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  39207157 atcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatatttttt 39207256  T
Q  156 ccttgacacaggatccttgacttgtccttcaaa 188  Q
    ||||||| |||| ||||| | |||||| |||||    
T  39207257 ccttgactcaggctcctttagttgtccatcaaa 39207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 39215823 - 39215721
Alignment:
Q  57 tcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttc 156  Q
    |||||||||||||||||||| |||| |  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||    
T  39215823 tcatcatcattaagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttc 39215727  T
Q  157 cttgac 162  Q
    ||||||    
T  39215726 cttgac 39215721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 39389129 - 39389211
Alignment:
Q  158 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||| ||||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39389129 ttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactct 39389211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 39161886 - 39161811
Alignment:
Q  165 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||    
T  39161886 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactct 39161811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 39207308 - 39207383
Alignment:
Q  165 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||    
T  39207308 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactct 39207383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 39370327 - 39370243
Alignment:
Q  53 atcatcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttc 137  Q
    |||||||||||||||||| |||||| ||  || ||||||   ||||||||| |||||||||||||||||||||| | ||||||||    
T  39370327 atcatcatcatcattaagtggaacaattataatgaaattaaatcaataaactagatgaataagaacatttacccaaatctttttc 39370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 39215676 - 39215601
Alignment:
Q  165 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||||||||||| |||||  ||| |||||||| |||| |||||| |||| | |||||||||||||||||    
T  39215676 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctct 39215601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 39421677 - 39421754
Alignment:
Q  74 aacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatt 151  Q
    |||||||| || |||| | ||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||| |||||    
T  39421677 aacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatatt 39421754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 39381509 - 39381585
Alignment:
Q  164 caggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||| |||||| |||||||  ||| |||||||| |||||||| |||| |||| ||||||||| |||||||    
T  39381509 caggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctct 39381585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 39473285 - 39473333
Alignment:
Q  105 agatgaataagaacatttacccgattctttttcttcatcaatatatttt 153  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatatttt 39473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 39468379 - 39468308
Alignment:
Q  169 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    ||||||||||||||||||| |  ||| |||||||| |||| ||||||||||||| ||||||||  |||||||    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctct 39468308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 39459295 - 39459221
Alignment:
Q  166 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    |||||||||||||||||||||||   ||| |||||||| |||||||| |||||   | |||||||||||||||||    
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctct 39459221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 39381338 - 39381435
Alignment:
Q  56 atcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 153  Q
    |||| ||||||||| || ||||  || || |||||| ||||| ||||| | ||||||||||||||||||| |||||||  || || ||||||||||||    
T  39381338 atcaacatcattaaaagaaacaactgaaatgaaattctttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatatttt 39381435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 39468488 - 39468447
Alignment:
Q  90 ttttttcaataaacaagatgaataagaacatttacccgattc 131  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  39468488 ttttttcaataaactagatgaataagaacatttaccagattc 39468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 39138045 - 39137997
Alignment:
Q  97 aataaacaagatgaataagaacatttacccgattctttttcttcatcaa 145  Q
    ||||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaa 39137997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 39152755 - 39152694
Alignment:
Q  92 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 153  Q
    |||||||||||| |||  ||||| |||||||||| |||||| |||| ||||||| |||||||    
T  39152755 ttttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatatttt 39152694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 39459432 - 39459379
Alignment:
Q  92 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaa 145  Q
    |||||||||| | | ||||||||||||| |||||||||||| |||| |||||||    
T  39459432 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 39459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 39397731 - 39397775
Alignment:
Q  111 ataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    |||||||| |||||||||||||||||| ||||  |||||||||||    
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttt 39397775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 16113510 - 16113416
Alignment:
Q  61 catcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 155  Q
    ||||||||| || | |||||| || ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||| ||||||    
T  16113510 catcattaaaagaagcagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgtttttt 16113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 16113339 - 16113268
Alignment:
Q  169 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 240  Q
    |||||||||||| |||||| |  ||| |||||||| |||||||||||| ||||| ||||||||| |||||||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctct 16113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 33561212 - 33561107
Alignment:
Q  53 atcatcatcatcattaagaggaacagttgcaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattt 152  Q
    ||||||||||||| | ||||||||| ||  ||  ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| | ||||||  ||||    
T  33561212 atcatcatcatcactgagaggaacacttataataaaattctttcaataaactagatgaagaagaacatttaccggattctttttccttatcaatgcattt 33561113  T
Q  153 tttcct 158  Q
    ||||||    
T  33561112 tttcct 33561107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 33561065 - 33561001
Alignment:
Q  158 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcaccttt 222  Q
    |||||| |||||||||| ||||||||||| ||  |||| |||||||| |||||||||||||||||    
T  33561065 ttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttt 33561001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 19807994 - 19807947
Alignment:
Q  98 ataaacaagatgaataagaacatttacccgattctttttcttcatcaa 145  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaa 19807947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1354 times since January 2019
Visitors: 3081