View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_high_10 (Length: 316)
Name: NF0378_high_10
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 44027173 - 44026953
Alignment:
| Q |
1 |
tataaagtgatataaaagagcgtcgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaag |
100 |
Q |
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|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027173 |
tataaagtgatataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaag |
44027074 |
T |
|
| Q |
101 |
atttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctcgtta |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
44027073 |
atttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctcatta |
44026974 |
T |
|
| Q |
198 |
actaaaccatctacattagat |
218 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
44026973 |
actaaaccatctacattagat |
44026953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43293788 - 43294008
Alignment:
| Q |
1 |
tataaagtgatataaaagagcgtcgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43293788 |
tataaagtgatataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaag |
43293887 |
T |
|
| Q |
101 |
atttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctcgtta |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
43293888 |
atttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctcatta |
43293987 |
T |
|
| Q |
198 |
actaaaccatctacattagat |
218 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43293988 |
actaaaccatctacattagat |
43294008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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