View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_high_13 (Length: 251)
Name: NF0378_high_13
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 47947345 - 47947117
Alignment:
| Q |
23 |
attaaagcctcatcattcaaagcatctacacatttatgttgaattagattgcttccatcttcacattccacaatccaaaattgatattttcggaaaattt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47947345 |
attaaagcctcatcattcaaagcatctacacatttatgttgaattagattgcttccatcttcactttccacaatccaaaattgatattttcggaaaattt |
47947246 |
T |
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| Q |
123 |
ctcagtatcccatttatcacccaggatgctcacttgaaagatttgttcccttcctagtgacccatgccacttgttgatggtttcaacaagaatatggaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47947245 |
ctcagtatcccatttatcacccaggatgctcacttgaaagatttgttcccttcctagtgacccatgccacttgttgatggtttcaacaagaatatggaac |
47947146 |
T |
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| Q |
223 |
aaataacaatgactatcgaaactaaacat |
251 |
Q |
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| T |
47947145 |
aaataacaatgactatcgaaactaaacat |
47947117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 47952775 - 47952547
Alignment:
| Q |
23 |
attaaagcctcatcattcaaagcatctacacatttatgttgaattagattgcttccatcttcacattccacaatccaaaattgatattttcggaaaattt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47952775 |
attaaagcctcatcattcaaagcatctacacatttatgttgaattagattgcttccatcttcactttccacaatccaaaattgatattttcggaaaattt |
47952676 |
T |
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| Q |
123 |
ctcagtatcccatttatcacccaggatgctcacttgaaagatttgttcccttcctagtgacccatgccacttgttgatggtttcaacaagaatatggaac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47952675 |
ctcagtatcccatttatcacccaggatgctcacttgaaagatttgttcccttcctagtgacccatgccacttgttgatggtttcaacaagaatatggaac |
47952576 |
T |
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| Q |
223 |
aaataacaatgactatcgaaactaaacat |
251 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47952575 |
aaataacaatgactatcgaaactaaacat |
47952547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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