View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_high_14 (Length: 240)
Name: NF0378_high_14
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51759729 - 51759950
Alignment:
| Q |
1 |
gcttttagagatcaaaatcaagcagcaaaataggttctagcatgacaaaacacaggttcaatctcacgagtaataggcctgaaatatagattaattacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51759729 |
gcttttagagatcaaaatcaagcagcaaaataggttctagcatgacaaaacataggttcaatctcacgagtaataggcctgaaatatagattaattacca |
51759828 |
T |
|
| Q |
101 |
aacttcagctactcgagactctagttatgttattagaatttgaagacaataggaaaatttaacaccaaatcttttatctaaaaga--aaggaaatttaat |
198 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51759829 |
aacttcagctactcgagactctagttatgttattagaatttgaacacaatagg-aaatttaacaccaaatcttttatctaaaagaacaaggaaatttaat |
51759927 |
T |
|
| Q |
199 |
aattaccattattcaaacggtga |
221 |
Q |
| |
|
|||||||||||||||||| |||| |
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| T |
51759928 |
aattaccattattcaaactgtga |
51759950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 6685133 - 6685283
Alignment:
| Q |
5 |
ttagagatcaaaatcaagcagcaaaataggttctagcatgacaaaacacaggttcaatctcacgagtaataggcctgaaatatagattaattaccaaact |
104 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||| | ||||||| |||||||| || |||||||||||||| |
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| T |
6685133 |
ttagagatcaaaatcaaccagcaaaattggttctagcatgacaaaacataagttcaatctcatgtataataggtctgaaataaagcttaattaccaaact |
6685232 |
T |
|
| Q |
105 |
tcagctactcgagactctagttatgttattagaatttgaagacaataggaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6685233 |
tcagctactcgagactctagttatgttattagaatttgaacacaataggaa |
6685283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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