View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_high_4 (Length: 570)
Name: NF0378_high_4
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Original strand, 37410529 - 37411059
Alignment:
| Q |
12 |
ataggtatgataatgcaatttgtcctgttgatcatgagcacaaggggaagatactgaataatgagattaatgcaacaattgttaggccactaccatttgg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410529 |
ataggtatgataatgcaatttgtcctgttgatcatgagcacaaggggaagatgctgaataatgagattaatgcaacaattgttaggccactaccatttgg |
37410628 |
T |
|
| Q |
112 |
tgctaaacttcatgccattattgatgcatgtcacagtgggaatgttcttgatttatcatttgtgtgcaagatgaacaggtaagtttatgaataatgctta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410629 |
tgctaaacttcatgccattattgatgcatgtcacagtgggaatgttcttgatttatcatttgtgtgcaagatgaacaggtaagtttatgaataatgctta |
37410728 |
T |
|
| Q |
212 |
tttagtgaagtattaagtgttgatactcttttcttgtgagctgaatctattttaacagggaagggtattatgcatgggaggataatacaaattcaagaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37410729 |
tttagtgaagtattaagtgttgatactcttttcttgtgagctgaatctattttaacagggaagggtattatacatgggaggataatacaaattcaagaaa |
37410828 |
T |
|
| Q |
312 |
ttatgaaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgatcaagtctctgtagatacctcggttagtaatcatttttctctttca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410829 |
ttatgaaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgatcaagtctctgtagatacctcggttagtaatcatttttctctttca |
37410928 |
T |
|
| Q |
412 |
tatatttgtgcaatgtcttacnnnnnnnaaggtatgtttggattgctagtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatct |
511 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37410929 |
tatatttgtgcaatgtcttactttttttaaggtatgtttggattgctagtaaagagagtgaaatagaatgaaatagtcgataaaaacatgaatgttatct |
37411028 |
T |
|
| Q |
512 |
tggtttattttattccatttcattccaccct |
542 |
Q |
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| T |
37411029 |
tggtttattttattccatttcattccaccct |
37411059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 2936688 - 2936615
Alignment:
| Q |
296 |
atacaaattcaagaaattatgaaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgatcaa |
369 |
Q |
| |
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|||||||||||| || | || || |||||||| ||||||||||||||||||||| |||||||||||| |||| |
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| T |
2936688 |
atacaaattcaataactgataaatacacaaaagttggggtagcaatttgtatttcatcttgtgatgatggtcaa |
2936615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 1716701 - 1716576
Alignment:
| Q |
15 |
ggtatgataatgcaatttgtcctgttgatcatgagcacaaggggaagatactgaataatgagattaatgcaacaattgttaggccactaccatttggtgc |
114 |
Q |
| |
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|||||||| | ||||| || ||||| ||| ||||||| |||||| |||||| || |||| || ||||| |||||||||||||| ||||| |||||| |
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| T |
1716701 |
ggtatgatgaagcaatatgccctgtcgattatgagcaggaggggatgatactcgatgatgaaatcaatgctacaattgttaggcctctacctcatggtgc |
1716602 |
T |
|
| Q |
115 |
taaacttcatgccattattgatgcat |
140 |
Q |
| |
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||||| |||||| || ||||||||| |
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| T |
1716601 |
caaactacatgcccttgttgatgcat |
1716576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 1712663 - 1712614
Alignment:
| Q |
317 |
aaggcacaaaaggaggggtagcaatttgtatttcagcttgtgatgatgat |
366 |
Q |
| |
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||||||||| ||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
1712663 |
aaggcacaagaggtgggctagcagtttgcatttcagcttgtgatgatgat |
1712614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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