View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_high_6 (Length: 415)
Name: NF0378_high_6
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 362351 - 362573
Alignment:
| Q |
7 |
tccaagaaaatagggatattgcagtatttcacgatttcagatcgataggtgctaaatttgagattataagtattctacctgttccaacaaaatagggata |
106 |
Q |
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| T |
362351 |
tccaacaaaatagggatattgcagtatttcacgatttcagatcgataggtgctaaatttgagattataagtattctacctgttccaacaaaatagggata |
362450 |
T |
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| Q |
107 |
ttgaaaagttcaacaattataaaaacatcttcctaactaagtacatttaatccgtattttattctatttgtctcgcgttcggttggtgagataagggaca |
206 |
Q |
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| T |
362451 |
ttgaaaagttcaacaattataaaaacatctt-----ctaagtacatttaatccgtattttattctatttgtctcgcgttcggttggtgagataagagaca |
362545 |
T |
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| Q |
207 |
ttccagataatattgttgacatttgttt |
234 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
362546 |
ttccagataacattgttgacatttgttt |
362573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 362592 - 362671
Alignment:
| Q |
218 |
attgttgacatttgtttataaataaaactttattttttgttcactctattgtttttaataaagagaagttaaatattttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
362592 |
attgttgacatttgtttataaataaaactttattttttgttcactctattgtttttaataaagagaagttaaatattttt |
362671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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