View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_low_1 (Length: 710)
Name: NF0378_low_1
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 91 - 566
Target Start/End: Complemental strand, 10300146 - 10299671
Alignment:
| Q |
91 |
ataatttggttttgtcataaaaagatgacagtggaaaaaggtagcaacatgaaccatcaacaacagccatttgaagtatccattgacactgctggttcca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10300146 |
ataatttggttttgtcataaaaagatgacagtggaaaaaggtagcaacatgaaccatcaacaacagccatttgaagtatccattgacactgctggttcca |
10300047 |
T |
|
| Q |
191 |
agtgttttgacgacgatggccgtttaaaacgaactggtaaattcattcatctcctgtatattttccctttcacctttaaaacatacagtaaaggttctcg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||| ||||||| |
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| T |
10300046 |
agtgttttgacgacgatggccgtttaaaacgaactggtaaattcattcttctcctatatactttctctttcacctttaaaacatacagtaaaagttctcg |
10299947 |
T |
|
| Q |
291 |
tgagtttgactcagttggtagggacatacagtaaaaaggtgaaaacctctgatgtattctctcttctcttgtgtgtgacataaataggaaatgaatggac |
390 |
Q |
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||||||| |||||||||| | ||||||||| |||| ||||||||| || | ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
10299946 |
tgagtttagttcagttggtaagtacatacagtcaaaacgtgaaaaccactaacgtattctcttttctcttgtgtgtgacataaacaggaaatgaatggac |
10299847 |
T |
|
| Q |
391 |
agcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccatcaatgatg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299846 |
agcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccatcaatgatg |
10299747 |
T |
|
| Q |
491 |
cttcttttctcgtttgttacttactacacctccactcttctttctgtttgttaccgtaccggtgatcaactcaatg |
566 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10299746 |
cttcttttctcgtttgttacttactacacctccactcttctttctgtttgttatcgtaccggtgatcaactcaatg |
10299671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 580 - 710
Target Start/End: Complemental strand, 10299439 - 10299309
Alignment:
| Q |
580 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
679 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10299439 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatctt |
10299340 |
T |
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| Q |
680 |
tttctctcaaattcctgactttgatcagtta |
710 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10299339 |
tttctctcaaattcctgactttgatcagtta |
10299309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 47919911 - 47919832
Alignment:
| Q |
395 |
agtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc |
474 |
Q |
| |
|
|||||||||||| | || |||||||| || ||||||||| |||| |||||||||||| |||||||| | || |||||||| |
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|
| T |
47919911 |
agtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgcacaattgggctggattgc |
47919832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 474
Target Start/End: Complemental strand, 47911100 - 47911018
Alignment:
| Q |
392 |
gcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc |
474 |
Q |
| |
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||||||||||||||| | || ||||| || || ||||||||| |||| |||||||||||| |||||||| | || |||||||| |
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| T |
47911100 |
gcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggattgc |
47911018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 580 - 706
Target Start/End: Original strand, 40204135 - 40204261
Alignment:
| Q |
580 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
679 |
Q |
| |
|
||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||| ||| | || | |
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| T |
40204135 |
caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattat |
40204234 |
T |
|
| Q |
680 |
tttctctcaaattcctgactttgatca |
706 |
Q |
| |
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|||||||||||||| || |||||||| |
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|
| T |
40204235 |
attctctcaaattccagattttgatca |
40204261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 40203594 - 40203685
Alignment:
| Q |
386 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
477 |
Q |
| |
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||||| ||||||||||| |||| ||||||||||| || ||||||||||||||| | || ||||||||||| |||||||||||||||||||| |
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| T |
40203594 |
tggactgcaagtgcacatgtaataacagctgtgatagggtctggagtgctgtctctagcttgggctattgctcaacttggatggattgctgg |
40203685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 580 - 706
Target Start/End: Original strand, 40208268 - 40208394
Alignment:
| Q |
580 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
679 |
Q |
| |
|
||||| ||||||| ||||||||||| || |||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| ||| | || | |
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| T |
40208268 |
caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattat |
40208367 |
T |
|
| Q |
680 |
tttctctcaaattcctgactttgatca |
706 |
Q |
| |
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|||||||||||||| || |||||||| |
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| T |
40208368 |
attctctcaaattccagattttgatca |
40208394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 580 - 665
Target Start/End: Original strand, 40200634 - 40200719
Alignment:
| Q |
580 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggt |
665 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||||| |||||| ||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
40200634 |
caattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggt |
40200719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 40199431 - 40199522
Alignment:
| Q |
386 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
477 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| | || ||||||||||||||| | | ||||||||||| |||||||||||||||||||| |
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|
| T |
40199431 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagtgctgtctctatcttgggctattgctcaacttggatggattgctgg |
40199522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 40207750 - 40207841
Alignment:
| Q |
386 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
477 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| | || |||||||| |||||| | || ||||||||||| ||||| |||||||||||||| |
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| T |
40207750 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctgg |
40207841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 44307354 - 44307285
Alignment:
| Q |
404 |
ataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattg |
473 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || || |||||||||| ||||||| | || ||||||| |
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|
| T |
44307354 |
ataataacagctgtgattgggtctggggtgctatccttagcatgggctactgcacaattgggttggattg |
44307285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 17499163 - 17499130
Alignment:
| Q |
284 |
gttctcgtgagtttgactcagttggtagggacat |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
17499163 |
gttctcgtgagtttgactcagttggtagggacat |
17499130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 482
Target Start/End: Original strand, 42369771 - 42369868
Alignment:
| Q |
385 |
atggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccat |
482 |
Q |
| |
|
|||||||||| ||||||||| | |||| ||||| || || |||||| | |||||| ||||| |||||||||||||||||||||| |||||||| |
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|
| T |
42369771 |
atggacagcagtagcacacatagtgacaggggtgataggatcaggagtgttatctttgccatggagcattgcacaacttggatggattgttggaccat |
42369868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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