View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_low_11 (Length: 338)
Name: NF0378_low_11
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 44 - 247
Target Start/End: Original strand, 33161931 - 33162134
Alignment:
| Q |
44 |
tctaacttaggtctagtaggtccaatatggtaaaaattgagttctttcaaaatatagtgagccctacaagtaattaatagcaaatagttttccatcattt |
143 |
Q |
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| T |
33161931 |
tctagcttaggtctagtaggtccaatatggtaaaaattgagttctttcaaaatatagtgagccctacaagtaattaatagcaaatagttttgcatcattt |
33162030 |
T |
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| Q |
144 |
atatcttgaagaatagtgacattgtctttgatgtgtatagaggcaaagaaaacttcatcatatgtaaacggtggtccatgaggttgatgatttgtcctaa |
243 |
Q |
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| T |
33162031 |
atatcttgaagaatattgacattgtctttgatgtgtatagaggcaaagaaaacttcatcatatgtaaacggtggtccatgaggttgatgatttgtcctaa |
33162130 |
T |
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| Q |
244 |
agtg |
247 |
Q |
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|||| |
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| T |
33162131 |
agtg |
33162134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 33170125 - 33170345
Alignment:
| Q |
30 |
tttcaaaactatactctaacttaggtctagt---aggtccaatatggtaaaaattgagttctttcaaaatatagtgagccctacaagtaattaatagcaa |
126 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170125 |
tttcaaaactatactctggcttaggcctagtagtaggtccaatatggtaaaaattgagttctttcaaaatatagtgagccctacaagtaattaatagcaa |
33170224 |
T |
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| Q |
127 |
atagttttccatcatttatatcttgaagaatagtgacattgtctttgatgtgtatagaggcaaagaaaacttcatcatatgtaaacggtggtccatgagg |
226 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33170225 |
atagttttgcatcatttatatcttgaagaatattgacattgtctttgatgtgtatagagtcaaagaaaacttcatcatatgtaaacggtggtccatgagg |
33170324 |
T |
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| Q |
227 |
ttgatgatttgtcctaaagtg |
247 |
Q |
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| T |
33170325 |
ttgatgatttgtcctaaagtg |
33170345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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