View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_low_2 (Length: 624)
Name: NF0378_low_2
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 93 - 624
Target Start/End: Complemental strand, 27066573 - 27066042
Alignment:
| Q |
93 |
ctccgtgaccggaagagaacaatcattcgtaagctacagcgatggtggtaactccggtaaccaaagtttcgcaagttacggcaaagactctattcacgca |
192 |
Q |
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| T |
27066573 |
ctccgtgaccggaagagaacaatcattcgtaagctacagcgatggtggtaactccggtaaccaaagtttcgcaagttacggcaaagactctattcacgca |
27066474 |
T |
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| Q |
193 |
gttaacggtttcactcagtatgcgaaaaatgctaacgtcttcaaatctgatttctctggatattcagaaaaaggctcaagcgctgtagatgctttcgtaa |
292 |
Q |
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| T |
27066473 |
gttaacggtttcactcagtatgcgaaaaatgctaacgtcttcaaatctgatttctctggatattcagaaaaaggctcaagcgctgtagatgctttcgtaa |
27066374 |
T |
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| Q |
293 |
gctatagcaagaatttgaacaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagatggagc |
392 |
Q |
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| T |
27066373 |
gctatagtaagaatttgaacaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagatggagc |
27066274 |
T |
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| Q |
393 |
tggttctggcgatgattctttcacttcgtatggtgagaattcgcagcgcggggtcaaggtggatttcaataactacggtcttaatccaggttatccaaaa |
492 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
27066273 |
tggttctggtgatgattctttcacttcgtatggtgagaattcgcagcgcggggtcaaggtggatttcaataactacggtcaaaatccagattatccaaaa |
27066174 |
T |
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| Q |
493 |
tctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaagg |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066173 |
tctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaagg |
27066074 |
T |
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| Q |
593 |
attacgacaagaaaggtatttgttttgctagt |
624 |
Q |
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|||| |||||||||||||||| |||||||||| |
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| T |
27066073 |
attatgacaagaaaggtatttcttttgctagt |
27066042 |
T |
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