View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0378_low_6 (Length: 496)
Name: NF0378_low_6
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 89 - 475
Target Start/End: Complemental strand, 44027533 - 44027142
Alignment:
| Q |
89 |
atcataatttagcggtgcatattttaaacttgtgttttggatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027533 |
atcataatttagcggtgcatattttaaacttgtgttttggatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
44027434 |
T |
|
| Q |
189 |
aattgtgtcaaatgtgtgattctttgatcgtcaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
288 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027433 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
44027334 |
T |
|
| Q |
289 |
tagttggagcatcttctaaggttgaggag-----nnnnnnntatgataccaattgatgagactagaaggcgcataggaatgttcaaaactctgatgccat |
383 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
44027333 |
tagttggagcatcttctaaggttgaggagaaaaaaattaactatgataccaattgatgggactagaaggtgcataggaatgttcagaactccgatgccat |
44027234 |
T |
|
| Q |
384 |
actttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtgatataaaagagcgttgagtaaca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027233 |
actttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtgatataaaagagcgttgagtaaca |
44027142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 89 - 475
Target Start/End: Original strand, 43293428 - 43293819
Alignment:
| Q |
89 |
atcataatttagcggtgcatattttaaacttgtgttttggatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293428 |
atcataatttagcggtgcatattttaaacttgtgttttgaatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
43293527 |
T |
|
| Q |
189 |
aattgtgtcaaatgtgtgattctttgatcgtcaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
288 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293528 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
43293627 |
T |
|
| Q |
289 |
tagttggagcatcttctaaggttgaggag-----nnnnnnntatgataccaattgatgagactagaaggcgcataggaatgttcaaaactctgatgccat |
383 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
43293628 |
tagttggagcatcttctaaggttgaggagaaaaaaattaactatgataccaattgatgggactagaaggtgcataggaatgttcagaactccgatgccat |
43293727 |
T |
|
| Q |
384 |
actttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtgatataaaagagcgttgagtaaca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43293728 |
actttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtgatataaaagagcgttgagtaaca |
43293819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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