View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0378_low_8 (Length: 415)
Name: NF0378_low_8
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0378_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 44027263 - 44026953
Alignment:
| Q |
10 |
gcataggaatgttcaaaactctgatgccatactttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtga |
109 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027263 |
gcataggaatgttcagaactccgatgccatactttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtga |
44027164 |
T |
|
| Q |
110 |
tataaaagagcgttgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaagatttgcaaat |
209 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027163 |
tataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaagatttgcaaat |
44027064 |
T |
|
| Q |
210 |
cattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctcgttaactaaaccat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
44027063 |
cattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctcattaactaaaccat |
44026964 |
T |
|
| Q |
307 |
ctacattagat |
317 |
Q |
| |
|
||||||||||| |
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|
| T |
44026963 |
ctacattagat |
44026953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 43293698 - 43294008
Alignment:
| Q |
10 |
gcataggaatgttcaaaactctgatgccatactttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtga |
109 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293698 |
gcataggaatgttcagaactccgatgccatactttttcatttaatgtaaaacttttagcttagctcgaatttgagaagaaaattggttgttataaagtga |
43293797 |
T |
|
| Q |
110 |
tataaaagagcgttgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaagatttgcaaat |
209 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43293798 |
tataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattttaagatttgcaaat |
43293897 |
T |
|
| Q |
210 |
cattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctcgttaactaaaccat |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
43293898 |
cattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctcattaactaaaccat |
43293997 |
T |
|
| Q |
307 |
ctacattagat |
317 |
Q |
| |
|
||||||||||| |
|
|
| T |
43293998 |
ctacattagat |
43294008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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