View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0378_low_9 (Length: 366)

Name: NF0378_low_9
Description: NF0378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0378_low_9
NF0378_low_9
[»] chr5 (6 HSPs)
chr5 (30-241)||(9886778-9886988)
chr5 (145-355)||(9884281-9884483)
chr5 (191-355)||(9887147-9887311)
chr5 (31-355)||(6140818-6141136)
chr5 (30-92)||(9884519-9884581)
chr5 (311-355)||(9886989-9887033)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 9886778 - 9886988
Alignment:
Q  30 ctaccgtgccgtttgagttaattgcatgctaagtgagttacaaaaaatcacttatatattaattgtgtctacctctcttttttatattgttatcatatgt 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  9886778 ctaccgtgccgtttgagttagttgcatgctaagtgagttacaaaaaatcacttatatattaattgtgtctacctctcttttttatattgtta-cttatgt 9886876  T
Q  130 gatgaccnnnnnnnnatgtgatatcttttattacaaaagattttctatcatcttttactttgtaatgatgatgaatttgaaataccttcttgttgctata 229  Q
    ||| |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9886877 gatcaccttttttttatgtgatatcttttattacaaaagattttctatcatcttttactttgtaatgatgatgaatttgaaataccttcttgttgttata 9886976  T
Q  230 tataagtgtgag 241  Q
    |||||| |||||    
T  9886977 tataagcgtgag 9886988  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 355
Target Start/End: Complemental strand, 9884483 - 9884281
Alignment:
Q  145 atgtgatatcttttattacaaaagattttctatcatcttttactttgtaatgatgatgaatttgaaataccttcttgttgctatatataagtgtgaggaa 244  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||||  || ||||||||    
T  9884483 atgtgataacttttattacaaaagtttttcgatcatcttttactttgtaatga------atttgaaataccttcttgttgctatata--agcgtgaggaa 9884392  T
Q  245 gagtctcacattttatgaaaaataaacgtttattgtaggttttagattgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatcccat 344  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  9884391 gagtctcacatttcatgaaaaataaacgtttattgcaggttttagattgattactcatagtacacttctttttcattgaacatgtttgtgaaaataccat 9884292  T
Q  345 ccaagcttcat 355  Q
    |||||||||||    
T  9884291 ccaagcttcat 9884281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 191 - 355
Target Start/End: Original strand, 9887147 - 9887311
Alignment:
Q  191 gtaatgatgatgaatttgaaataccttcttgttgctatatataagtgtgaggaagagtctcacattttatgaaaaataaacgtttattgtaggttttaga 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  9887147 gtaatgatgatgaatttgaaataccttcttgttgttatatataagcgtgaggaagagtctcacatttcatgaaaaataaacgtttatttcaggttttaga 9887246  T
Q  291 ttgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatcccatccaagcttcat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9887247 ttgagtactcatagtacacttcttttccgttgaacatgtttgtgaaaatctcatccaaacttcat 9887311  T

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Target: chr5; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 31 - 355
Target Start/End: Original strand, 6140818 - 6141136
Alignment:
Q  31 taccgtgccgtttgagttaattgcatgctaagtgagttacaaaaaatcacttatatattaattgtgtctacctctcttttttatattgttatcatatgtg 130  Q
    |||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||      | ||||||  |  ||||||||||||| || |||| |    
T  6140818 taccgttccgtttgaattagttgcatgataagtgagttacaaaaaatcacttatatatgt----tatctaccgtt--tttttatattgttgtcttatgcg 6140911  T
Q  131 atgaccnnnnnnnnatgtgatatcttttattacaaaagattttctatcatcttttactttgtaatgatgatgaatttgaaataccttcttgttgctatat 230  Q
    || |||        |||||||| ||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||  |||    
T  6140912 atcaccttttttt-atgtgataacttttgttacaaaagattttctatcatattttactttgccatgatgatgaatttgaaataccttcttgttgc--tat 6141008  T
Q  231 ataagtgtgaggaagagtctcacattttatgaaaaataaacgtttattgtaggttttagattgagt---actcatagtacacttcttttccgttgaacat 327  Q
     |||  ||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||   |||||| ||||||||||||| |||||||||     
T  6141009 gtaatcgtgaggaagagtctcacatttcatgaaaaataaacgttcattgcaggtttttgattgagtacgactcatggtacacttctttttcgttgaacac 6141108  T
Q  328 gtttgtgaaaatcccatccaagcttcat 355  Q
    ||||||||||||| ||||||||||||||    
T  6141109 gtttgtgaaaatcgcatccaagcttcat 6141136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 9884581 - 9884519
Alignment:
Q  30 ctaccgtgccgtttgagttaattgcatgctaagtgagttacaaaaaatcacttatatattaat 92  Q
    ||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9884581 ctaccgttccgtttgaattagttgcatgctaagtgaattacaaaaaatcacttatatattaat 9884519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 9886989 - 9887033
Alignment:
Q  311 tcttttccgttgaacatgtttgtgaaaatcccatccaagcttcat 355  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  9886989 tcttttccgttgaacatgtttgtgaaaatctcatccaaacttcat 9887033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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