View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0379_low_1 (Length: 300)
Name: NF0379_low_1
Description: NF0379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0379_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 5484511 - 5484783
Alignment:
| Q |
1 |
caaattttactggaattgtccctactcatcttggcaatttgtcaaatttgcgctaccttgatatctctgaccaattctcgccaattatggtcagagactt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5484511 |
caaattttactggaattgtccctaatcatcttggcaatttgtcaaatttgcgctaccttgatatctctgaccaattctcgccaattatgggcagagactt |
5484610 |
T |
|
| Q |
101 |
aagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484611 |
aagttggctctctgctctatcttcgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatg |
5484710 |
T |
|
| Q |
201 |
tcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484711 |
tcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
5484783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 286
Target Start/End: Original strand, 5500605 - 5500798
Alignment:
| Q |
93 |
agagacttaagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtga |
192 |
Q |
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||||||||||| ||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
5500605 |
agagacttaagctggctatctgctctgacttcgcttcaatatcttggcatggattttatcaacatcaccaactcgtcccgtgagttgtttcgagctgtga |
5500704 |
T |
|
| Q |
193 |
ataagatgtcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttc |
286 |
Q |
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| T |
5500705 |
ataagatgtcatctctattagagttgcatttgtccttttgcagtcttgcttcactccctccagcttcaccatttctaaatattacatctctttc |
5500798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5481647 - 5481878
Alignment:
| Q |
1 |
caaattttactggaattgtccctactcatcttggcaatttgtcaaatttgcgctaccttgatatctctgaccaattctcgccaattatggtcagagactt |
100 |
Q |
| |
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|||||||||| ||||| |||| | |||||||||||||| |||||||||||| || |||||||||||| || ||| ||| || || |||||||||||| |
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| T |
5481647 |
caaattttacaggaatggtccttcctcatcttggcaatctgtcaaatttgcattatcttgatatctctaactcattttcgtcactttgggtcagagactt |
5481746 |
T |
|
| Q |
101 |
aagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatg |
200 |
Q |
| |
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||||||||||||| |||| |||| |||||| ||||||||||||||||||| ||| | | |||||||||||| |||||||||||| |||||||||||||| |
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| T |
5481747 |
aagttggctctctactctgtcttcgcttcaatatcttggcatggattttgccaaatttatcaactcgccccacgagttgtttcgatctgtgaataagatg |
5481846 |
T |
|
| Q |
201 |
tcatctctattagagttgcatttgtcctcttg |
232 |
Q |
| |
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|| ||| | ||||||||||| ||||||||||| |
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| T |
5481847 |
tcttctatgttagagttgcacttgtcctcttg |
5481878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 5495481 - 5495769
Alignment:
| Q |
4 |
attttactggaattgtccctactcatcttggcaatttgtcaaatttgcgctaccttgatatctctgaccaattctcgccaattatggtcagagacttaag |
103 |
Q |
| |
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||||| ||||||| ||||| |||||||||||||||||||||| |||| || |||||||||||| || ||| || | || |||||||||||| || |
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| T |
5495481 |
atttttctggaatggtcccccctcatcttggcaatttgtcaaacttgcattatcttgatatctctaccccattttcatccctttgggtcagagactttag |
5495580 |
T |
|
| Q |
104 |
ttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatgtca |
203 |
Q |
| |
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||||||||||||| | |||| ||||| | |||| ||||| ||| ||| || || |||| |||||||||||||| ||||| | || |||||||||| || |
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| T |
5495581 |
ttggctctctgctttgtcttcacttcaatttcttagcatgaattatgtaaatattaccacctcgccccatgagtggtttcaaactatgaataagatacca |
5495680 |
T |
|
| Q |
204 |
tctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgct |
292 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5495681 |
tctctattagagttgcatttaatgtattgcaatcttgcttttctcccaccatcttcaccatttttaaatattacatcactttctgtgct |
5495769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5489696 - 5489987
Alignment:
| Q |
1 |
caaattttactggaattgtccctactcatcttggcaatttgtcaaatttgcgctaccttgatatctctgaccaattctcgccaattatggtcagagactt |
100 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||||||||||| |||||||| | ||| |||||||||||| || || ||| || || || |||||||| |
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| T |
5489696 |
caaatttcactggaatggtcccgactaatcttggcaatttatcaaatttacactatcttgatatctctagcccatattcgtcactttgggctagagactt |
5489795 |
T |
|
| Q |
101 |
aagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagctgtgaataagatg |
200 |
Q |
| |
|
||| ||||| |||||||| |||| ||||| ||||||| |||| ||||||| ||||| ||||||||||| ||||||||||| | || ||||||||||||| |
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| T |
5489796 |
aagctggctatctgctctgtcttcgcttcgatatcttgacatgaattttgtaaacattaccaactcgccacatgagttgttccaagttgtgaataagatg |
5489895 |
T |
|
| Q |
201 |
tcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgct |
292 |
Q |
| |
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|||| | | ||||| ||||||||| | ||||||||||||| |||| || || || ||||||||||||||| |||||||||||||||||| |
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| T |
5489896 |
tcatatttgttagaattgcatttggcttcttgcaatcttggcgctctccctccatcgtcaccatttttaaattctacatcactttctgtgct |
5489987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 5467027 - 5467230
Alignment:
| Q |
89 |
ggtcagagacttaagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgccccatgagttgtttcgagct |
188 |
Q |
| |
|
|||||||||| |||| ||||||| | | | |||| |||||| |||||| |||||| ||||| |||||||| |||| |||| |||||||||||||||| |
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| T |
5467027 |
ggtcagagacataagctggctctataccttgtcttcgcttcaatatcttaacatggactttgttaacatcacagactcaccccgtgagttgtttcgagct |
5467126 |
T |
|
| Q |
189 |
gtgaataagatgtcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctg |
288 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||| | || || || |||||||| |||||||||||| ||||||||| || |
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| T |
5467127 |
gttaataagatgccatctctgttagagttgcatttgtccttttgcaatcttgctgcactccctccatcttcaccctttttaaatatttcatcactttatg |
5467226 |
T |
|
| Q |
289 |
tgct |
292 |
Q |
| |
|
|||| |
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|
| T |
5467227 |
tgct |
5467230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5476571 - 5476865
Alignment:
| Q |
1 |
caaattttactggaattgtccctactcatcttggcaatttgtcaaatttgcgctaccttgatatctct-gacca-attctcgccaattatggtcagagac |
98 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||| |||||||||||||||| | | |||||||||||| | || ||||| || || |||||||||| |
|
|
| T |
5476571 |
caaaatttacaggaatggtccctactgatcttggtaatttgtcaaatttgcaccatcttgatatctctagttcagattctt--cagtttgggtcagagac |
5476668 |
T |
|
| Q |
99 |
ttaagttggctctctgctctatctttgcttcactatcttggcatggattttgtcaacatcaccaactcgcccc---atgagttgtttcgagctgtgaata |
195 |
Q |
| |
|
||||| ||||| |||||||| |||| ||||| |||||||||||||||| |||||| | ||||||||| ||| | |||||||||||||||||| | |
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| T |
5476669 |
ttaagctggctttctgctctgtcttcacttcaatatcttggcatggattatgtcaatgttaccaactcgtccctctagttgttgtttcgagctgtgaaaa |
5476768 |
T |
|
| Q |
196 |
agatgtcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaatattacatcactttctgtgct |
292 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | |||||| || ||||||| || || |||| |||||||||||||||||| ||||||||||||| |
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|
| T |
5476769 |
agatgtcttctctgttagagttgcatttggcttcttgcggaatttcttctctccctccaacttcgccatttttaaatattacaccactttctgtgct |
5476865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5466903 - 5466953
Alignment:
| Q |
1 |
caaattttactggaattgtccctactcatcttggcaatttgtcaaatttgc |
51 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||| || |||||||||||||||| |
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|
| T |
5466903 |
caaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgc |
5466953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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