View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_high_1 (Length: 579)
Name: NF0380_high_1
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 41280922 - 41280368
Alignment:
| Q |
30 |
gttgttggctagggctttatgctacaattcaaagtttaggaccagctatgttgagtttatgggctataggtccaaatcatttctctaaaggaactgcttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280922 |
gttgttggctagggctttatgctacaattcaaagtttaggtccagctatgttgagtttatgggctataggtccaaatcatttctctaaaggaactgcttc |
41280823 |
T |
|
| Q |
130 |
tattgcggtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtat |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280822 |
tattgctgtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtat |
41280723 |
T |
|
| Q |
230 |
gtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280722 |
gtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcat |
41280623 |
T |
|
| Q |
330 |
tgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac--nnnnnnnatgctca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41280622 |
tgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacactttttttttatgctca |
41280523 |
T |
|
| Q |
428 |
tatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacac-------------tactaaaatattagaataatt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
41280522 |
tatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacacacacacactagtatactaaaatattaaaataatt |
41280423 |
T |
|
| Q |
515 |
gagacacctttgttactctcatgtcttttttgttgttgttgttgtgacttctgtg |
569 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41280422 |
gagacacctttgttactctcgtgtcttttttgttgttgttgttgtgacttctgtg |
41280368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
277 |
tattcatttggctgctagtactgctttaggtgtaattgct |
316 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
302 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagaga |
401 |
Q |
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||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
|
| Q |
402 |
cattaatta |
410 |
Q |
| |
|
||||||||| |
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|
| T |
34981790 |
cattaatta |
34981782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
272 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
320 |
Q |
| |
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|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
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|
| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
277 |
tattcatttggctgctagtactgctttaggtgtaattgct |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
277 |
tattcatttggctgctagtactgctttaggtgtaattgct |
316 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
277 |
tattcatttggctgctagtactgctttaggtgtaattgct |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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