View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_high_11 (Length: 310)
Name: NF0380_high_11
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 291
Target Start/End: Complemental strand, 19621483 - 19621192
Alignment:
| Q |
2 |
tatactttctttcatttgatgtaattgagaactaattcagtgatgcctgcatactcttgtggttctgctgt-gttttttccccaatttttgtcatgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
19621483 |
tatactttctttcatttgatgtaattgagaactaattcagtgatgcctgcatactcttgtggttcttctgttgttttttccccaatttttgtcatgtttt |
19621384 |
T |
|
| Q |
101 |
tctccttatagtgaaaaatctaggttgttagggtttttgaatgatatgcttttcaatgaaagctgaaaaatggaatggattcttattgatattttactga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19621383 |
tctctgtatagtgaaaaatctaggttgttagggtttttgaatgatatgcttttcaatgaaagctgaaaaatggaatggattcttattgatattttactga |
19621284 |
T |
|
| Q |
201 |
acatgaatggcaattgtaagtgtcttattatcttacctttgctttaacattgcctagataagtct-atattaaacaattgtggcatatgatg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19621283 |
acatgaatggcaattgtaagtgtcttattatcttacctttgctttaacattgcctagataagtctaatattaaacaattgtggcatatgatg |
19621192 |
T |
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