View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_high_14 (Length: 293)
Name: NF0380_high_14
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 3703039 - 3702771
Alignment:
| Q |
1 |
aaaagaatgttgcaatttt-attaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaaccatacatcttatcttat |
99 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703039 |
aaaagaatgttgcaatttttattaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaaccatacatcttatcttat |
3702940 |
T |
|
| Q |
100 |
acaaagccacttcaacattatgtaaa----taaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaata |
195 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702939 |
acaaagccacatcaacattatgtaaataaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaata |
3702840 |
T |
|
| Q |
196 |
acacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattat |
264 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
3702839 |
acacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattat |
3702771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 3699231 - 3699083
Alignment:
| Q |
112 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
212 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattat |
264 |
Q |
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||||| ||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattat |
3699083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3699390 - 3699346
Alignment:
| Q |
1 |
aaaagaatgttgcaattttattaattgatctcttatttggctatg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3699390 |
aaaagaatgttgcaattttattaattgatctcttatttggctatg |
3699346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
84 |
atacatcttatcttatacaaagccacttcaaca |
116 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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