View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_high_3 (Length: 468)
Name: NF0380_high_3
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 95 - 453
Target Start/End: Complemental strand, 39582302 - 39581945
Alignment:
| Q |
95 |
ggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcaatgtctgaagctgcagacttgaaaggtcaccatatccac |
194 |
Q |
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| T |
39582302 |
ggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcattgtctgaagctgcagacttgaaaggtcaccatatccac |
39582203 |
T |
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| Q |
195 |
aatgggtatgtaactacaactttgttcttatgtatgtactttgtttgaacctatattttaggtgaaataaatctataattgtttaacatgattattcatc |
294 |
Q |
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| T |
39582202 |
aattggtatgtaactacaactttgttcttatgtatgtactttgtttgaacctatattttaggtgaaataaatctataattgtttaacatgattattcatc |
39582103 |
T |
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| Q |
295 |
ccaagttataaatagatatatcagtgcaattcttacacctaaaagaacgtcaaaaatacatnnnnnnnttgcattttctgcagtacttgtannnnnnnnn |
394 |
Q |
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| T |
39582102 |
ccaagttataaatagatatatcagtgcaattcttacacctaaaagaacgtcaaaaatacataaaaaaattgcattttttgcagtacttgta-ttttttct |
39582004 |
T |
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| Q |
395 |
nnnnnnnnncataaaaaatgtgcacaaaattaagaaacagtgtgttgaatttccacagg |
453 |
Q |
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| T |
39582003 |
tttatttttcataaaaaatgtgcacaagattaagaaacagtgtgttgaatttctacagg |
39581945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 39619478 - 39619593
Alignment:
| Q |
95 |
ggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcaatgtctgaagctgcagacttgaaaggtcaccatatccac |
194 |
Q |
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||||| ||||||| || ||| |||||||| || |||||| |||||||||| | | ||||| |||||||||| |||||||||||||| ||||||||| | |
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| T |
39619478 |
ggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattgtctgaagcagcagacttgaaaggccaccatatcaat |
39619577 |
T |
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| Q |
195 |
aatgggtatgtaacta |
210 |
Q |
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| T |
39619578 |
accgggtatgtaacta |
39619593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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