View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0380_high_33 (Length: 209)

Name: NF0380_high_33
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0380_high_33
NF0380_high_33
[»] chr1 (16 HSPs)
chr1 (1-191)||(48179339-48179529)
chr1 (1-186)||(47873854-47874039)
chr1 (1-133)||(2417751-2417886)
chr1 (1-139)||(40140972-40141114)
chr1 (2-193)||(33860546-33860737)
chr1 (2-193)||(33920186-33920377)
chr1 (1-135)||(40027189-40027322)
chr1 (3-135)||(49287413-49287542)
chr1 (1-133)||(37847219-37847356)
chr1 (64-189)||(49540497-49540622)
chr1 (1-189)||(45196748-45196942)
chr1 (1-196)||(49440299-49440494)
chr1 (1-55)||(41186128-41186182)
chr1 (6-79)||(49540418-49540491)
chr1 (157-190)||(40027131-40027164)
chr1 (69-133)||(37850074-37850138)
[»] chr3 (2 HSPs)
chr3 (1-190)||(14964282-14964471)
chr3 (1-54)||(540447-540500)
[»] chr7 (1 HSPs)
chr7 (5-139)||(32347371-32347505)
[»] chr5 (2 HSPs)
chr5 (1-139)||(31266823-31266964)
chr5 (14-55)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (2-54)||(34606051-34606103)
chr6 (2-54)||(34727328-34727380)
chr6 (2-54)||(33465656-33465708)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 48179529 - 48179339
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179529 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 48179430  T
Q  101 ttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179429 ttttgcaattttttatcatctcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 47874039 - 47873854
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    |||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || ||||||| ||||||||||||||||||||    
T  47874039 ttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccatgaggagctggaagcgtaatgcat 47873940  T
Q  101 ttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 186  Q
    |||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| |||||||||||    
T  47873939 ttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgctctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2417751 - 2417886
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaatg 97  Q
    ||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || |||||||||||||| |     
T  2417751 ttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtacta 2417850  T
Q  98 catttttgcaattttttatcatctcctgaatacaca 133  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2417851 catttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 40141114 - 40140972
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaatg 97  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||| ||| ||     
T  40141114 ttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccataaggaggagctggaaacgtgata 40141015  T
Q  98 catttttgcaa-ttttttatcatctcctgaatacacactgcat 139  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  40141014 catttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 33860737 - 33860546
Alignment:
Q  2 tactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatt 101  Q
    |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || || |||||| ||||    
T  33860737 tactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaaaccgtaatacatt 33860638  T
Q  102 tttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccacagg 193  Q
    ||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| ||||||||||||||||||    
T  33860637 tttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatccccacagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 33920186 - 33920377
Alignment:
Q  2 tactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatt 101  Q
    |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || || |||||| ||||    
T  33920186 tactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaaaccgtaatacatt 33920285  T
Q  102 tttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccacagg 193  Q
    ||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| ||||||||||||||||||    
T  33920286 tttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatccccacagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 40027322 - 40027189
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    ||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||||||||||||| |||    
T  40027322 ttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagctggaagcgtaatacat 40027224  T
Q  101 ttttgcaattttttatcatctcctgaatacacact 135  Q
    ||||| ||||||||| |||| ||||||||||||||    
T  40027223 ttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 49287542 - 49287413
Alignment:
Q  3 actcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcattt 102  Q
    |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||   ||||||||||| ||||||||||    
T  49287542 actcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat---gagctggaagcataatgcattt 49287446  T
Q  103 ttgcaattttttatcatctcctgaatacacact 135  Q
    || ||||||||||||||| ||  ||||||||||    
T  49287445 tttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37847356 - 37847219
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    ||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || ||||||||||||||    
T  37847356 ttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatgcat 37847257  T
Q  101 tttt-----gcaattttttatcatctcctgaatacaca 133  Q
    ||||      |||||| |||||||||||||||||||||    
T  37847256 ttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  64 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 163  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  164 tacacagagtttctctcatatcccca 189  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 45196942 - 45196748
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg------gaagcgta 94  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      |||| |||    
T  45196942 ttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctggaactagaagtgta 45196843  T
Q  95 atgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccca 189  Q
    |||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | ||||||||||||    
T  45196842 atgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcatatcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 49440299 - 49440494
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    ||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  ||||| ||  ||||||||| ||| |     
T  49440299 ttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatgaggatttggaagcgtgatgtac 49440398  T
Q  101 ttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccacaggttc 196  Q
    |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || |||||||||||||||| ||||    
T  49440399 ttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactctcatatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41186182 - 41186128
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 55  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186182 ttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  6 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 79  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  157 gatgacatacacagagtttctctcatatccccac 190  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  69 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 133  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 14964471 - 14964282
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||||||||||||||||    
T  14964471 ttactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctggaagcgtaatgcat 14964372  T
Q  101 ttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccac 190  Q
    |||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||||||    
T  14964371 ttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatccccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 540447 - 540500
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 54  Q
    ||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540447 ttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 32347371 - 32347505
Alignment:
Q  5 tcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcattttt 104  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| ||||||||||||    
T  32347371 tcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatgcattttt 32347470  T
Q  105 gcaattttttatcatctcctgaatacacactgcat 139  Q
    ||||| |||||||||| |||||||| |||| ||||    
T  32347471 gcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 31266964 - 31266823
Alignment:
Q  1 ttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcat 100  Q
    |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| |||||||||    
T  31266964 ttactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaatgcat 31266865  T
Q  101 ttttgcaatt---ttttatcatctcctgaatacacactgcat 139  Q
    ||||||||||   |||||||||| |||||||| ||| |||||    
T  31266864 ttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  14 gaataatctacttcatattgttgatgcctaaaacaccaatcg 55  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 34606103 - 34606051
Alignment:
Q  2 tactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 54  Q
    |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606103 tactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 34727380 - 34727328
Alignment:
Q  2 tactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 54  Q
    |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727380 tactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33465656 - 33465708
Alignment:
Q  2 tactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 54  Q
    |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465656 tactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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