View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_high_4 (Length: 419)
Name: NF0380_high_4
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 3703021 - 3703212
Alignment:
| Q |
7 |
aaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattt |
106 |
Q |
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| T |
3703021 |
aaaattgcaacattcttttctttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattt |
3703120 |
T |
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| Q |
107 |
taaaagcacacttcttaataatacttgttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacacacaa |
198 |
Q |
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| T |
3703121 |
taaaagcacacttcttaataatacttcttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacatacaa |
3703212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3699366 - 3699475
Alignment:
| Q |
1 |
attaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatca |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
3699366 |
attaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaattgatatagttcagttacatca |
3699465 |
T |
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| Q |
101 |
gtattttaaa |
110 |
Q |
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| ||||||| |
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| T |
3699466 |
ttgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 3703386 - 3703420
Alignment:
| Q |
280 |
tcacttgcatcattccttctaccacatatgttacc |
314 |
Q |
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| T |
3703386 |
tcacttgcatcattccctctaccacatatgttacc |
3703420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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