View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0380_high_8 (Length: 325)
Name: NF0380_high_8
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_high_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 27 - 325
Target Start/End: Complemental strand, 19621815 - 19621517
Alignment:
| Q |
27 |
aaaactatcgtgcataagacctcaaaatgagtttataatttagttggagtatcacttgctctataatccggttttatagggttgagttaggttcgactca |
126 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19621815 |
aaaactattgtgcataagacctcaaaatgagtttataatttagttggagtatcacttgctctataatccggttttatagggttgagttaggttcgactca |
19621716 |
T |
|
| Q |
127 |
aattatttaaaatccattgggccacctgctatcgggtaacacaatagatgtcaagttctaggcgagagggggtgtgttaagagtgtgggagggttgagtt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19621715 |
aattatttaaaatccattgggccacctgctatcgggtaacacaatagatatcaagttctaggtgagagggggtgtgttaagagtgtgggaggtttgagtt |
19621616 |
T |
|
| Q |
227 |
aggttgaaaccaaattctatgagcttagacttgttatttgattcttttgtttactaattgactagtttttaaggattctcactgttatttttcattttc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19621615 |
aggttgaaaccaaattctatgagcttagacttgttatttgattcttttgtttactaattgactagtttttaaggattctcactgttatttttcattttc |
19621517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 388 times since January 2019
Visitors: 3060