View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0380_low_11 (Length: 318)
Name: NF0380_low_11
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 48179623 - 48179506
Alignment:
| Q |
51 |
gatattggtcggaacacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactc |
150 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179623 |
gatattggtcggaacacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactc |
48179524 |
T |
|
| Q |
151 |
aactagagaataatctac |
168 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48179523 |
aactagagaataatctac |
48179506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 40141136 - 40141090
Alignment:
| Q |
123 |
aacacgttgtacaataagcaagttactcaactagagaataatctacc |
169 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
40141136 |
aacacggtgtacaacatgcaagttactcaactagagaataatctacc |
40141090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 40027337 - 40027298
Alignment:
| Q |
130 |
tgtacaataagcaagttactcaactagagaataatctacc |
169 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
40027337 |
tgtacaatatgcaagttactcaacaagagaataatctacc |
40027298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 41186210 - 41186160
Alignment:
| Q |
117 |
aaaaataacacgttgtacaataagcaagttactcaactagagaataatcta |
167 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
41186210 |
aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatcta |
41186160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 33548952 - 33548912
Alignment:
| Q |
258 |
cttcattcattcaatttaataaataatacatcggacaacac |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33548952 |
cttcattcattcaatttaataaataatacatcggacaacac |
33548912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 14964485 - 14964448
Alignment:
| Q |
131 |
gtacaataagcaagttactcaactagagaataatctac |
168 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
14964485 |
gtacaatatgcaaattactcaactagagaataatctac |
14964448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1813 times since January 2019
Visitors: 3091