View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0380_low_12 (Length: 315)

Name: NF0380_low_12
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0380_low_12
NF0380_low_12
[»] chr6 (12 HSPs)
chr6 (95-277)||(3220243-3220425)
chr6 (113-315)||(3220186-3220388)
chr6 (95-314)||(3220198-3220417)
chr6 (95-314)||(3220408-3220642)
chr6 (95-314)||(3220318-3220552)
chr6 (95-315)||(3220303-3220523)
chr6 (95-310)||(3220273-3220488)
chr6 (95-306)||(3220378-3220589)
chr6 (100-291)||(3220458-3220649)
chr6 (95-306)||(3220438-3220649)
chr6 (95-314)||(3220363-3220582)
chr6 (95-145)||(3220603-3220653)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 3220243 - 3220425
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220243 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 3220342  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtt 277  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||| || |||||    
T  3220343 cgctggtttttgcactgatggtttctgcatcgttggtttttgcactgatggtttctgcatcgatggtttttgcaccgatggtt 3220425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 113 - 315
Target Start/End: Original strand, 3220186 - 3220388
Alignment:
Q  113 tttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactga 212  Q
    |||||||| ||||||| |||| | ||||| | |||| | ||||||| ||||  |||||||| |||||||||||||| ||||||  ||||||||||||  |    
T  3220186 tttgcatcgatggtttatgcatcgatggtttttgcaccaatggtttatgcatcgatggtttttgcaccgatggtttttgcatcaatggtttttgcaccaa 3220285  T
Q  213 tggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgatggtttttgc 312  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3220286 tggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgttggtttttgc 3220385  T
Q  313 act 315  Q
    |||    
T  3220386 act 3220388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 3220198 - 3220417
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    |||| |||| |||||||||||||| ||||||||| |||| | ||||| | |||| ||||||||||||||   ||||||| |||||| ||||| |||||||    
T  3220198 gtttatgcatcgatggtttttgcaccaatggtttatgcatcgatggtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcat 3220297  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || ||||||||||||||||||||| |||| ||||||||| ||||  | |||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  3220298 cgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgttggtttttgcactgatggtttc 3220397  T
Q  295 tgcatcgatggtttttgcac 314  Q
    ||||||||||||||||||||    
T  3220398 tgcatcgatggtttttgcac 3220417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 3220408 - 3220642
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| | || |||||||| ||||||    
T  3220408 gtttttgcaccgatggttgctgcatcaatggtttttgcactaatggtgtctgcatcgatggtttttgcaacgatggttttttcatcgatggttgctgcat 3220507  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactg---------------atggtttatgcaccgatggtttctgcatcgctggtttt 279  Q
    || ||||||||||||| ||||||||| |||||||||||||||||| |               ||||||| |||||||||||| ||||||||| |||||||    
T  3220508 cgatggtttttgcactaatggtttcttcatcgatggtttttgcaccgctggttgctgcatcaatggtttttgcaccgatggtgtctgcatcgatggtttt 3220607  T
Q  280 tgcactgatggtttctgcatcgatggtttttgcac 314  Q
    ||||| ||||||| |||||||||||||||||||||    
T  3220608 tgcaccgatggttgctgcatcgatggtttttgcac 3220642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 3220318 - 3220552
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgca---------------c 179  Q
    |||| |||||||||||||| ||||||  ||||||||||||  ||||| ||||||||| ||||||||||||||||||||| ||||               |    
T  3220318 gtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgttggtttttgcactgatggtttctgcatcgatggtttttgcac 3220417  T
Q  180 cgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttt 279  Q
    |||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||||||  |||||||| | || |||||||| |||||||| |||||||    
T  3220418 cgatggttgctgcatcaatggtttttgcactaatggtgtctgcatcgatggtttttgcaacgatggttttttcatcgatggttgctgcatcgatggtttt 3220517  T
Q  280 tgcactgatggtttctgcatcgatggtttttgcac 314  Q
    |||||| ||||||||| ||||||||||||||||||    
T  3220518 tgcactaatggtttcttcatcgatggtttttgcac 3220552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 95 - 315
Target Start/End: Original strand, 3220303 - 3220523
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    |||||||||| |||||||| |||| | ||||||| |||| |  |||| | ||||  |||||||| ||||  | |||||| ||||| ||||||||||||||    
T  3220303 gtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcatcgttggtttttgcactgatggtttctgcat 3220402  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || |||||||||||| ||||||| ||||||| |||||||||||||| ||||| | |||| ||||||||| |||| || |||||||| ||  ||||||| |    
T  3220403 cgatggtttttgcaccgatggttgctgcatcaatggtttttgcactaatggtgtctgcatcgatggtttttgcaacgatggttttttcatcgatggttgc 3220502  T
Q  295 tgcatcgatggtttttgcact 315  Q
    |||||||||||||||||||||    
T  3220503 tgcatcgatggtttttgcact 3220523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 310
Target Start/End: Original strand, 3220273 - 3220488
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    ||||||||||| ||||| | |||||| |||||||||||||  ||||| | |||| ||||||||| ||||  | |||||| ||||| ||||||||||||||    
T  3220273 gtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttctgcat 3220372  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||  |||| | ||||||| ||||    |||| | ||||  ||||||||     
T  3220373 cgttggtttttgcactgatggtttctgcatcgatggtttttgcaccgatggttgctgcatcaatggtttttgcactaatggtgtctgcatcgatggtttt 3220472  T
Q  295 tgcatcgatggttttt 310  Q
    |||| |||||||||||    
T  3220473 tgcaacgatggttttt 3220488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 306
Target Start/End: Original strand, 3220378 - 3220589
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    |||||||||| |||||||| |||||| |||||||||||||| |||||  ||||||| |||||||||||||| ||||| | |||| ||||||||| ||||     
T  3220378 gtttttgcactgatggtttctgcatcgatggtttttgcaccgatggttgctgcatcaatggtttttgcactaatggtgtctgcatcgatggtttttgcaa 3220477  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || |||||||| ||  ||||||| |||||||||||||||||||||| ||||||| | || ||||||||| |||| ||||||||  ||||   |||||||     
T  3220478 cgatggttttttcatcgatggttgctgcatcgatggtttttgcactaatggtttcttcatcgatggtttttgcaccgctggttgctgcatcaatggtttt 3220577  T
Q  295 tgcatcgatggt 306  Q
    |||| |||||||    
T  3220578 tgcaccgatggt 3220589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 291
Target Start/End: Original strand, 3220458 - 3220649
Alignment:
Q  100 tgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctg 199  Q
    |||| |||||||||||||| | ||||||||| || | |||||  |||||||||||||||||||||| ||||||| | || ||||||||| |||| |||||    
T  3220458 tgcatcgatggtttttgcaacgatggttttttcatcgatggttgctgcatcgatggtttttgcactaatggtttcttcatcgatggtttttgcaccgctg 3220557  T
Q  200 gtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggt 291  Q
    |||  ||||   ||||||| |||| ||||||| | ||||  |||||||| ||||||||||||| |||||||| |||||||||||| ||||||    
T  3220558 gttgctgcatcaatggtttttgcaccgatggtgtctgcatcgatggtttttgcaccgatggttgctgcatcgatggtttttgcaccgatggt 3220649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 306
Target Start/End: Original strand, 3220438 - 3220649
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    ||||||||||  ||||| | |||||| |||||||||||| | ||||| | | |||||||||||  ||||  |||||||| |||||  ||||||||| |||    
T  3220438 gtttttgcactaatggtgtctgcatcgatggtttttgcaacgatggttttttcatcgatggttgctgcatcgatggtttttgcactaatggtttcttcat 3220537  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || |||||||||||| | ||||| ||||||| ||||||||||||| |||||| | |||| ||||||||| |||| || |||||  ||||  ||||||||     
T  3220538 cgatggtttttgcaccgctggttgctgcatcaatggtttttgcaccgatggtgtctgcatcgatggtttttgcaccgatggttgctgcatcgatggtttt 3220637  T
Q  295 tgcatcgatggt 306  Q
    |||| |||||||    
T  3220638 tgcaccgatggt 3220649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 3220363 - 3220582
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcat 194  Q
    |||| |||| || |||||||||||   ||||||| |||| | ||||| | |||| ||||||||  ||||   ||||||| |||||  ||||| |||||||    
T  3220363 gtttctgcatcgttggtttttgcactgatggtttctgcatcgatggtttttgcaccgatggttgctgcatcaatggtttttgcactaatggtgtctgcat 3220462  T
Q  195 cgctggtttttgcactgatggtttctgcatcgatggtttttgcactgatggtttatgcaccgatggtttctgcatcgctggtttttgcactgatggtttc 294  Q
    || |||||||||||  |||||||| | |||||||||||  ||||  |||||||| |||||  ||||||||| ||||| |||||||||||| | ||||| |    
T  3220463 cgatggtttttgcaacgatggttttttcatcgatggttgctgcatcgatggtttttgcactaatggtttcttcatcgatggtttttgcaccgctggttgc 3220562  T
Q  295 tgcatcgatggtttttgcac 314  Q
    |||||| |||||||||||||    
T  3220563 tgcatcaatggtttttgcac 3220582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 3220603 - 3220653
Alignment:
Q  95 gtttttgcaccgatggtttttgcatcaatggtttttgcaccaatggtgtct 145  Q
    ||||||||||||||||||  |||||| |||||||||||||| |||||||||    
T  3220603 gtttttgcaccgatggttgctgcatcgatggtttttgcaccgatggtgtct 3220653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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