View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_low_28 (Length: 254)
Name: NF0380_low_28
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 40857330 - 40857093
Alignment:
| Q |
17 |
gaacctgtgcaacagatagaatatataggaattaataaaagtaataaatatcaatagcatgaaaaaagatcaattatcatgaagaaaatgaaactagaat |
116 |
Q |
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| T |
40857330 |
gaacctgtgccacagatagaatatataggaattaataaaagtaataaatatcaatagcatgaaaaaagatcaattatcatgaagaaaatgaaactagaat |
40857231 |
T |
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| Q |
117 |
cagtgacctatttaaagcagaaatgaatcacttacagcatctacagatgcttgagcggggcctttaaaataattgagtgagctctctaggaggcgtcggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40857230 |
tagtgacctatttaaagcagaaatgaatcacttacagcatctacagatgcttgagcgggacctttaaaataattgagtgagctctctaggaggcgtcggt |
40857131 |
T |
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| Q |
217 |
aaccttgctcgggagcaattagatgaggttggtatcca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40857130 |
aaccttgctcgggagcaattagatgaggttggtatcca |
40857093 |
T |
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