View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_low_32 (Length: 251)
Name: NF0380_low_32
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 28998691 - 28998560
Alignment:
| Q |
10 |
gcacagatcactaagaaatggaaaccctatactcactttataaactagaggtccaattaatgaagaagaggatgaaggaaattaaaatagacaaatccaa |
109 |
Q |
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| T |
28998691 |
gcacagatcactaagaaatggaaaccctatactcattttataaactagaggtccaattaatgaaga---ggatgaaggaaattaaaatagacaaatccaa |
28998595 |
T |
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| Q |
110 |
catcatacaatagtaccatagttgaccacaattac |
144 |
Q |
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| T |
28998594 |
catcatacaatagtaccatagttgaccacaattac |
28998560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 28998541 - 28998496
Alignment:
| Q |
174 |
tctcaaaaaagaaagttaagatctatggatgatatgtattataagt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28998541 |
tctcaaaaaagaaagttaagatctatggatgatatgtatgataagt |
28998496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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