View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_low_33 (Length: 251)
Name: NF0380_low_33
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28475252 - 28475025
Alignment:
| Q |
1 |
taaaataatgcggtaaacatcattttacaactatctacgaggagatttaaactctgtctctttaggttataagtcaaacagtcaaatcaagaacatcatg |
100 |
Q |
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| T |
28475252 |
taaaataatgcggtaaatatcattttacaactatctacgaggagatttaaactctgtccctttaggttataagtcaaacagtcaaatcaagcacatcatg |
28475153 |
T |
|
| Q |
101 |
gacaaagaaaaaacaacttttgtattagtcacagtcaataaaatgtagcatacatattccataacctatgaaacataaatcctagtttttgataaaggat |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28475152 |
gacaaagaaaaa-caacttttgtattagtcacagtcaattaaatgtaccatacatattccataacctatgaaacataaatcctagtttttgataaaggat |
28475054 |
T |
|
| Q |
201 |
tcaaacctctgtggtcagattcttcatat |
229 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
28475053 |
tcaaacctctgtggtcaggttcttcatat |
28475025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 28466710 - 28466604
Alignment:
| Q |
122 |
gtattagtcacagtcaataaaatgtagcatacatattccataacctatgaaacataaatcctagtttttgataaaggattcaaacctctgtggtcagatt |
221 |
Q |
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|||||||||||||||||||||||||| ||| | ||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||||||||||||| || |
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| T |
28466710 |
gtattagtcacagtcaataaaatgtaccatgcttattccataacatatcaaacataattcctag-gtttaataaaggattcaaacctctgtggtcaggtt |
28466612 |
T |
|
| Q |
222 |
cttcatat |
229 |
Q |
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|||||||| |
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| T |
28466611 |
cttcatat |
28466604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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