View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0380_low_34 (Length: 248)
Name: NF0380_low_34
Description: NF0380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0380_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 37272684 - 37272589
Alignment:
| Q |
1 |
cttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
96 |
Q |
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| T |
37272684 |
cttctgttgtttgtggtaacaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
37272589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 37268646 - 37268551
Alignment:
| Q |
1 |
cttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
96 |
Q |
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| T |
37268646 |
cttctgttatttgtggttgcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacggtgaaac |
37268551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 37272547 - 37272466
Alignment:
| Q |
139 |
atgggatacataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgtttttt |
220 |
Q |
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| T |
37272547 |
atgggatatataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgtttttt |
37272466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 37268501 - 37268420
Alignment:
| Q |
139 |
atgggatacataaaccattcatttctcttgtaacatgtatatttttaatgctatataaatcattctgttgtttgtgtttttt |
220 |
Q |
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| T |
37268501 |
atgggatatataaatcattcatatttcttgtaacatgtatattttcaatgctatataaatcattctgttgtctgtgtttttt |
37268420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39017061 - 39016975
Alignment:
| Q |
1 |
cttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgaga |
87 |
Q |
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||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
39017061 |
cttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaatattttgcagcctgctctcaaccagatcaacaggatgaga |
39016975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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