View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0381_high_1 (Length: 374)
Name: NF0381_high_1
Description: NF0381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0381_high_1 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 316
Target Start/End: Complemental strand, 7766844 - 7766558
Alignment:
| Q |
30 |
catgaagccaatttgatggttaatataaagaaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaatgtcatttaccaaaacttcaa |
129 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766844 |
catgaagccaatttgatggttaatgtaaagaaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaatgtcatttaccaaaacttcaa |
7766745 |
T |
|
| Q |
130 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaattgagctttagttcctcacttttggtccataatgcaag |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
7766744 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaattgagcttcagttcctcacttttggtccatagtgcaag |
7766645 |
T |
|
| Q |
230 |
ttgttcctaaatcctactcttaaagcaatggcataggtttattaagcatttagcttatattattcggattgaatgttgcagcttaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766644 |
ttgttcctaaatcctactcttaaagcaatggcataggtttattaagcatttagcttatattattcggattgaatgttgcagcttaga |
7766558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 7774171 - 7773923
Alignment:
| Q |
30 |
catgaagccaatttgatggttaatataaagaaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaatgtcatttaccaaaacttcaa |
129 |
Q |
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|||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
7774171 |
catgaagcaaatttgatggttaatgtgaagaaaaatgtagcatgtcttggaattgttgatggagggacagagccaagaatgtcatttacaaaagcttcaa |
7774072 |
T |
|
| Q |
130 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaattgagctttagttcctcacttttggtccataatgcaag |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
7774071 |
ttgttattggtggacatcaattggaggacaatcttttggtgtttgatttagcttcttccaaattgagctttagttcctcacttttggttcacaatgcaag |
7773972 |
T |
|
| Q |
230 |
ttgttcctaaatcctactcttaaagcaatggcataggtttattaagcat |
278 |
Q |
| |
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|||||||||||| |||||||| || |||||||||||||||| |||||| |
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| T |
7773971 |
ttgttcctaaattctactcttgaattaatggcataggtttataaagcat |
7773923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 7704378 - 7704445
Alignment:
| Q |
126 |
tcaattgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaatt |
193 |
Q |
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||||||||||||||||| || |||||||| || ||||| |||| ||||||||| | |||||||||||| |
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|
| T |
7704378 |
tcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaatt |
7704445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 7745888 - 7745825
Alignment:
| Q |
130 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaatt |
193 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||| |||| ||||||||||| |||||| ||||| |
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| T |
7745888 |
ttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
7745825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 7733959 - 7734007
Alignment:
| Q |
60 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
108 |
Q |
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|||||||||||||||||||||||||| ||||| || | ||||||||||| |
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| T |
7733959 |
aaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
7734007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 7711704 - 7711767
Alignment:
| Q |
130 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaatt |
193 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||| |||||||||| |||||| ||||| |
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|
| T |
7711704 |
ttgtgattggtggacaccaattggaggacaatctattggagtttgatttgatttcttctaaatt |
7711767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 7749869 - 7749824
Alignment:
| Q |
122 |
aacttcaattgttattggtggacatcaattggaagacaatcttttg |
167 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||||||||||||||| |
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| T |
7749869 |
aacttccattgttattggtgggcatcagttagaagacaatcttttg |
7749824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 7704327 - 7704375
Alignment:
| Q |
60 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
108 |
Q |
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|
|||||||||||||||||||||||||| ||||| || | ||| ||||||| |
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| T |
7704327 |
aaaaatgtagcatgtcttggatttgtggatggtggtaaagaaccaagaa |
7704375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 7711649 - 7711697
Alignment:
| Q |
60 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
108 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || | ||||||||||| |
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| T |
7711649 |
aaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaa |
7711697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 7726537 - 7726585
Alignment:
| Q |
60 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
108 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || | ||||||||||| |
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| T |
7726537 |
aaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaa |
7726585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 7745943 - 7745895
Alignment:
| Q |
60 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||||||| |
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|
| T |
7745943 |
aaaaatgtagcatgtcttggatttgtggatggtggtaatgagccaagaa |
7745895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 11909 - 12176
Alignment:
| Q |
29 |
acatgaagccaatttgatggttaatataaagaaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaatgtcatttaccaaaacttca |
128 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||||||| | | |||||| |||||||||||| |||||| ||| | | | ||| ||||| |
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| T |
11909 |
acatgaaaccaatttaatggttaatgtaaagaaaaatgtagcatgtttggcatttgtcgatggagggacatcaccaagatggtcgtctgcaaaagcttca |
12008 |
T |
|
| Q |
129 |
attgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaattgagctttagttcctcacttttggtccataatgcaa |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12009 |
gttgttattggtggaca--------------atcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaatgcaa |
12094 |
T |
|
| Q |
229 |
gttgttcctaaatcctactcttaaagcaatggcataggtttattaagca-tttagcttatattattcggattgaatgttgca |
309 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||| |||||||| ||||| |||||||| | ||||||||||||| |
|
|
| T |
12095 |
gttgttcctaaatcctactcttgaattaatggcatatgttcattaagcattttagattatattagccacattgaatgttgca |
12176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 48521697 - 48521583
Alignment:
| Q |
122 |
aacttcaattgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaattgagctttagttcctcacttttggtccat |
221 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| || |||||| ||| ||||||| | | ||| || ||| | ||||||| ||||||||||| || | |
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|
| T |
48521697 |
aacttcaattattattggtgggcatcaattggaggataatcttgtggagtttgatcttgtttcctcaaaacttggctttagctcctcacttttactcaac |
48521598 |
T |
|
| Q |
222 |
aatgcaagttgttcc |
236 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
48521597 |
aaagcaagttgttcc |
48521583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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