View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0381_low_3 (Length: 264)
Name: NF0381_low_3
Description: NF0381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0381_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 8974848 - 8974667
Alignment:
| Q |
1 |
agttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8974848 |
agttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttg |
8974749 |
T |
|
| Q |
101 |
tgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgatgtc |
182 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8974748 |
tgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtc |
8974667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 8963452 - 8963271
Alignment:
| Q |
1 |
agttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttg |
100 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| | || |||||||||||||||||||| |
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| T |
8963452 |
agttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaa |
8963353 |
T |
|
| Q |
101 |
tgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgatgtc |
182 |
Q |
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| T |
8963352 |
tgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtc |
8963271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 8958433 - 8958267
Alignment:
| Q |
6 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || || || | |||||||||||| ||||| |
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| T |
8958433 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaa |
8958334 |
T |
|
| Q |
106 |
aaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtc |
172 |
Q |
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|||| |||||| | || || | |||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
8958333 |
aaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtattatcaattatgtc |
8958267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 8945632 - 8945813
Alignment:
| Q |
1 |
agttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttg |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| | | || ||||||||| |
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| T |
8945632 |
agttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaa |
8945731 |
T |
|
| Q |
101 |
tgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgatgtc |
182 |
Q |
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|
||||| ||| ||||| || | || |||||| |||||||||| ||| ||||||||||||||||| |||||| ||||| |||| |
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| T |
8945732 |
tgcaagaggagttgcaacttcattacctttttcaatgtctttgatatgttccttagtattatcatatatgtttgatgttgtc |
8945813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 9948117 - 9948272
Alignment:
| Q |
15 |
agaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttg |
114 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||| ||| || |||| ||| ||||| | | | | || || ||||||| ||||| ||| |||| |
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| T |
9948117 |
agaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataactagctcctaatgcaagaggagttg |
9948216 |
T |
|
| Q |
115 |
ctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatg |
170 |
Q |
| |
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| || ||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||| |
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| T |
9948217 |
caactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatg |
9948272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9949368 - 9949422
Alignment:
| Q |
1 |
agttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaag |
55 |
Q |
| |
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|||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
9949368 |
agttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaag |
9949422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 34962420 - 34962593
Alignment:
| Q |
6 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaa |
105 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || || || | |||||||||||| ||||| |
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| T |
34962420 |
agtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaa |
34962519 |
T |
|
| Q |
106 |
aaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgatgtc |
182 |
Q |
| |
|
||||||||||| | |||| || ||||||||||||| || ||||||||| |||||||||||||||||||| |||| |
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| T |
34962520 |
aaggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtc |
34962593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 21686795 - 21686976
Alignment:
| Q |
1 |
agttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttg |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| | ||||||||| || ||||| |||||||||||||| |
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| T |
21686795 |
agttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaa |
21686894 |
T |
|
| Q |
101 |
tgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgatgtc |
182 |
Q |
| |
|
||||||||| |||||| | |||| || |||||||||||||| ||| ||||||||||||| || ||||||||||||| |||| |
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|
| T |
21686895 |
tgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtc |
21686976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 49008590 - 49008501
Alignment:
| Q |
8 |
tgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctcc |
97 |
Q |
| |
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|||||| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||| |
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| T |
49008590 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcc |
49008501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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