View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0383_high_11 (Length: 248)

Name: NF0383_high_11
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0383_high_11
NF0383_high_11
[»] chr5 (4 HSPs)
chr5 (122-222)||(12540921-12541021)
chr5 (1-76)||(12540800-12540875)
chr5 (122-222)||(28385570-28385670)
chr5 (6-72)||(28385454-28385520)
[»] chr7 (2 HSPs)
chr7 (2-72)||(3417520-3417590)
chr7 (124-222)||(3417370-3417468)
[»] chr2 (6 HSPs)
chr2 (1-70)||(13448478-13448547)
chr2 (122-222)||(13440436-13440536)
chr2 (1-72)||(13454949-13455020)
chr2 (122-222)||(13448599-13448699)
chr2 (123-222)||(13455071-13455170)
chr2 (1-72)||(13440315-13440386)
[»] chr4 (4 HSPs)
chr4 (2-67)||(48965445-48965510)
chr4 (6-72)||(48958264-48958333)
chr4 (1-72)||(48961408-48961482)
chr4 (126-178)||(48974349-48974401)
[»] chr6 (2 HSPs)
chr6 (6-37)||(12590200-12590231)
chr6 (44-72)||(12483454-12483482)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 12540921 - 12541021
Alignment:
Q  122 aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 221  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540921 aggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 12541020  T
Q  222 t 222  Q
    |    
T  12541021 t 12541021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12540800 - 12540875
Alignment:
Q  1 taacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggcatcca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540800 taacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggcatcca 12540875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 28385570 - 28385670
Alignment:
Q  122 aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 221  Q
    |||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  28385570 aggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatg 28385669  T
Q  222 t 222  Q
    |    
T  28385670 t 28385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 28385454 - 28385520
Alignment:
Q  6 tgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    ||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||||    
T  28385454 tgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 3417590 - 3417520
Alignment:
Q  2 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  3417590 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca 3417520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 3417468 - 3417370
Alignment:
Q  124 gaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgt 222  Q
    ||||||||||||||||||||||||||  | |||||| |||| |||||||||||||||||||||| ||| ||||||  |||| |||||||||||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgt 3417370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13448478 - 13448547
Alignment:
Q  1 taacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcgg 70  Q
    ||||||||||||||||||||||||||||||||||||| || || || |||||||| ||||||||||||||    
T  13448478 taacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcgg 13448547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 13440436 - 13440536
Alignment:
Q  122 aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 221  Q
    ||||||||||||||||||||||||||    | |||||| |||||| || ||||||||||||||||| ||| ||||||  || ||||||||||||||||||    
T  13440436 aggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatg 13440535  T
Q  222 t 222  Q
    |    
T  13440536 t 13440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13454949 - 13455020
Alignment:
Q  1 taacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    |||| |||||||||||||||||||||||||||||||||||  | |||||| |||| ||||||||||||||||    
T  13454949 taacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggca 13455020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 13448599 - 13448699
Alignment:
Q  122 aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg 221  Q
    |||||||||||||||||||||||||||   | ||||||  || ||||| ||||| ||||||||||| ||| | ||||  || ||||||||||||||||||    
T  13448599 aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg 13448698  T
Q  222 t 222  Q
    |    
T  13448699 t 13448699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 13455071 - 13455170
Alignment:
Q  123 ggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgt 222  Q
    ||||||||||||||||| || |||||   | |||||| || |||||| ||||||||||||||||| | | |  ||| ||| |||||||||||||||||||    
T  13455071 ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt 13455170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13440315 - 13440386
Alignment:
Q  1 taacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    |||| ||||||||||||||| |||||||||||||| |  | | |||||||||||| || |||||||| ||||    
T  13440315 taacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggca 13440386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 48965445 - 48965510
Alignment:
Q  2 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatccctt 67  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||    
T  48965445 aacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 48958264 - 48958333
Alignment:
Q  6 tgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    ||||||||||| |||||||||||||||||   ||| ||||||||||||||||| || ||||| |||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggca 48958333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 48961408 - 48961482
Alignment:
Q  1 taacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggca 72  Q
    |||| ||||||||||| ||| |||||||||||||   ||| ||| ||||||||||||| |||||||| |||||||    
T  48961408 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggca 48961482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 48974349 - 48974401
Alignment:
Q  126 acaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcata 178  Q
    ||||||||||||||| ||||||||  | |||||| ||||| ||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcata 48974401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 12590231 - 12590200
Alignment:
Q  6 tgtggggcccaacccctaatgatcaaaccctt 37  Q
    ||||||||||||||||||||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaaccctt 12590200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 12483482 - 12483454
Alignment:
Q  44 aatgtttctctcctcaaatcccttcggca 72  Q
    |||||||||||||||||||||||||||||    
T  12483482 aatgtttctctcctcaaatcccttcggca 12483454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1865 times since January 2019
Visitors: 3094