View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0383_high_4 (Length: 304)
Name: NF0383_high_4
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0383_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 40546195 - 40545902
Alignment:
| Q |
1 |
aaatcaaggagaccacactgttttgtaaggaaaatttgaacctggtaaatgagagttttacaaagtaaaactgataaaacttcaaatatctctatcatct |
100 |
Q |
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| T |
40546195 |
aaatcaaggagaccacactgttttgtaaggaaaatttgaacctggtaaatgagagttttacaaagtaaaaatgataaaacttcaaatatctctatcatct |
40546096 |
T |
|
| Q |
101 |
caatatttggaaatataggcaattcagcatagatataaagtgccgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546095 |
caatatttggaaatataggcaattcagcatagatgtaaagtggcgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcatt |
40545996 |
T |
|
| Q |
201 |
actttccttcatgattgctaaaattaatccgtataaataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgagaataa |
294 |
Q |
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| T |
40545995 |
actttctttcacgattactaaaattaatccgtataaataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgaaaataa |
40545902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 268
Target Start/End: Complemental strand, 31790423 - 31790258
Alignment:
| Q |
103 |
atatttggaaatataggcaattcagcatagatataaagtgccgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattac |
202 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||||||| |||| ||||||||||||| | |||| |||| |||||||||| |
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| T |
31790423 |
atatttggaaatataggcaattcatcatagatgtaaagtggcatcatactaaatgtaatctgcggtcatttcaaacaggcgttttaatcggatgcattac |
31790324 |
T |
|
| Q |
203 |
tttccttcatgattgctaaaattaatccgtataaataatttctctttgaatcaaacgtataaattt |
268 |
Q |
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|||| ||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31790323 |
tttctttcgaaattactaaggttaatccgtataaataatttctatttgaatcaaacgtataaattt |
31790258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 5163233 - 5163154
Alignment:
| Q |
219 |
taaaattaatccgtataaataatttctctttgaatcaaacgtataa----attttatcaaatcataaattctgagaataa |
294 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| | | | |||||||||||||||||||||| ||||| |
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| T |
5163233 |
taaagttaatccgtagaaataatttctctttgaatcaaacgtttgaacttagtttatcaaatcataaattctgaaaataa |
5163154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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