View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0383_low_1 (Length: 597)
Name: NF0383_low_1
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0383_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 36941423 - 36941973
Alignment:
| Q |
1 |
gaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941423 |
gaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccca |
36941522 |
T |
|
| Q |
101 |
aacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941523 |
aacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcg |
36941622 |
T |
|
| Q |
201 |
gtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgatccacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941623 |
gtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgatccacaa |
36941722 |
T |
|
| Q |
301 |
accttgctaaaccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941723 |
accttgctaaaccgaaatctccaagttttgcgttaaattctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattc |
36941822 |
T |
|
| Q |
401 |
ttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941823 |
ttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaatgtctaaa |
36941922 |
T |
|
| Q |
501 |
ctaccatttggcatgtactcatacacaagcaagagttttttcctttgatga |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941923 |
ctaccatttggcatgtactcatacacaagcaagagttttttcctttgatga |
36941973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 36939701 - 36939145
Alignment:
| Q |
1 |
gaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
36939701 |
gaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccca |
36939602 |
T |
|
| Q |
101 |
aacccattccacaatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactatac |
194 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36939601 |
aacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatac |
36939502 |
T |
|
| Q |
195 |
acatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgat |
294 |
Q |
| |
|
|| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
36939501 |
acgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatggt |
36939402 |
T |
|
| Q |
295 |
ccacaaaccttgctaaaccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939401 |
ccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttc |
36939302 |
T |
|
| Q |
395 |
ccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaatg |
494 |
Q |
| |
|
||||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
36939301 |
ccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaatg |
36939202 |
T |
|
| Q |
495 |
tctaaactaccatttggcatgtactcatacacaagcaagagttttttcctttgatga |
551 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || ||||| |||| |||| |
|
|
| T |
36939201 |
tctaaactaccatttggcatgtactcatatacaagtaaaagcttttttctttcatga |
36939145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 442
Target Start/End: Complemental strand, 36949613 - 36949483
Alignment:
| Q |
312 |
ccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagt |
411 |
Q |
| |
|
|||||||||||||| |||| || || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| || |
|
|
| T |
36949613 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36949514 |
T |
|
| Q |
412 |
acaacaatgcagatgccaagcctttagctat |
442 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||| |
|
|
| T |
36949513 |
acaataatgccgaggccaaacctctagctat |
36949483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 442
Target Start/End: Complemental strand, 36959747 - 36959617
Alignment:
| Q |
312 |
ccgaaatctccaagttttgcgttaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagt |
411 |
Q |
| |
|
|||||||||||||| |||| || || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| || |
|
|
| T |
36959747 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36959648 |
T |
|
| Q |
412 |
acaacaatgcagatgccaagcctttagctat |
442 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||| |
|
|
| T |
36959647 |
acaataatgccgaggccaaacctctagctat |
36959617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 36934535 - 36934450
Alignment:
| Q |
345 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
430 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||| | ||||||| |||||||||||| ||||| || | |||||| || ||||| |
|
|
| T |
36934535 |
tccaacattatgttgcttgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaa |
36934450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 5820970 - 5820934
Alignment:
| Q |
385 |
cacattgttcccattcttcatgcaagtacaacaatgc |
421 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |
|
|
| T |
5820970 |
cacattgttcccattcttcatgaaggtacaacaatgc |
5820934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
150 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
230 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
|
|
| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
150 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
230 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
|
|
| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 47871658 - 47871573
Alignment:
| Q |
345 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
430 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||| |
|
|
| T |
47871658 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
47871573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
162 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
221 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
164 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
224 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| | |||||||| ||||| |||||| |
|
|
| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 39226124 - 39226160
Alignment:
| Q |
496 |
ctaaactaccatttggcatgtactcatacacaagcaa |
532 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
39226124 |
ctaaactaccatttgtcatgtactcataaacaagcaa |
39226160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 737 times since January 2019
Visitors: 3064