View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0383_low_11 (Length: 294)

Name: NF0383_low_11
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0383_low_11
NF0383_low_11
[»] chr6 (1 HSPs)
chr6 (6-265)||(16872089-16872346)
[»] chr4 (2 HSPs)
chr4 (109-246)||(36286373-36286510)
chr4 (179-237)||(40823616-40823674)
[»] chr7 (6 HSPs)
chr7 (178-231)||(19939357-19939410)
chr7 (178-231)||(19970496-19970549)
chr7 (179-247)||(20231783-20231851)
chr7 (179-238)||(20243855-20243914)
chr7 (182-237)||(20005149-20005204)
chr7 (179-238)||(20264242-20264301)
[»] chr3 (1 HSPs)
chr3 (178-223)||(1091486-1091531)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 16872346 - 16872089
Alignment:
Q  6 agtgagatgaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcatt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872346 agtgaaatgaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcatt 16872247  T
Q  106 acgtttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattacta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16872246 acgtttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagcttcggagtattacta 16872147  T
Q  206 ctagagattgttagtggaagaagaaacacaagtatttttgacattaattataggatttgt 265  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  16872146 ctagagattgttagtggaagaagaa--acaagtatttttgacattaattataggatttgt 16872089  T

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Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 36286373 - 36286510
Alignment:
Q  109 tttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactacta 208  Q
    ||||| ||||||||| |||| || ||||||||| |||||||||||||||| |||||||||  ||| || |||||||||||||||||||||||||||||||    
T  36286373 tttgacctttaaatgcagtcgctacatatctccagaatacgcaatgcaaggaattgtttccgagcaatgtgatgtctttagctttggagtattactacta 36286472  T
Q  209 gagattgttagtggaagaagaaacacaagtatttttga 246  Q
    |||||||||  ||| ||||||||||||||| |||||||    
T  36286473 gagattgtttttggtagaagaaacacaagtctttttga 36286510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 40823674 - 40823616
Alignment:
Q  179 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 237  Q
    ||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||| ||||    
T  40823674 gatgtctttagctttggtgttttgatactagagattattagtgggagaagaaactcaag 40823616  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 19939357 - 19939410
Alignment:
Q  178 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 231  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19939357 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19939410  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 19970496 - 19970549
Alignment:
Q  178 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 231  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19970496 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19970549  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 20231783 - 20231851
Alignment:
Q  179 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagtatttttgac 247  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| ||||| ||| ||||    
T  20231783 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagtttttatgac 20231851  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 20243855 - 20243914
Alignment:
Q  179 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt 238  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| |||||    
T  20243855 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagt 20243914  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 20005204 - 20005149
Alignment:
Q  182 gtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 237  Q
    ||||| ||||||||||| || ||| |||||||||||||||||||| ||||| ||||    
T  20005204 gtcttcagctttggagttttgctaatagagattgttagtggaagacgaaactcaag 20005149  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 20264242 - 20264301
Alignment:
Q  179 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt 238  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||| |||||    
T  20264242 gatgtttttagctttggtgtattgctactagagattgttatcgggagaagaaactcaagt 20264301  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 1091486 - 1091531
Alignment:
Q  178 tgatgtctttagctttggagtattactactagagattgttagtgga 223  Q
    |||||| ||||||||||| |||||| ||||||||||||| ||||||    
T  1091486 tgatgtatttagctttggtgtattattactagagattgtaagtgga 1091531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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