View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0383_low_12 (Length: 281)

Name: NF0383_low_12
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0383_low_12
NF0383_low_12
[»] chr4 (1 HSPs)
chr4 (30-272)||(49235479-49235721)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 49235721 - 49235479
Alignment:
Q  30 atacttgcttatttttaacaaacataatctacacaagtatcatgcacaatatgtgttgaggtgaggttcaatcgtggcaaatttatcacactcgtacgta 129  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  49235721 atacttgcttatttttaccaaacataatctacacaagtatcatgcacaatatgtgttgaggtgaggttcaatcgtggcaaattggtcacactcgtacgta 49235622  T
Q  130 ttacaatacaaattaattaatatcttcacgcaaaaataatattatgatttaattattgactaagatcttcgacgagacctcaagataggaagaagcacta 229  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49235621 ttacaatacaaattaattaatatcttcacgcaaaaataacattatgatttaattattgactaagatcttcgacgagacctcaagataggaagaagcacta 49235522  T
Q  230 ctagcaagaggaatgctaatgatccaagctgagacagaataat 272  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  49235521 ctagcaagaggaatactaatgatccaagctgagacagaataat 49235479  T

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