View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0383_low_15 (Length: 259)

Name: NF0383_low_15
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0383_low_15
NF0383_low_15
[»] chr5 (26 HSPs)
chr5 (29-243)||(4016326-4016533)
chr5 (149-245)||(18136349-18136445)
chr5 (148-243)||(35403583-35403678)
chr5 (151-243)||(28857072-28857164)
chr5 (151-243)||(39728331-39728423)
chr5 (151-222)||(3654004-3654075)
chr5 (181-243)||(14974395-14974457)
chr5 (150-243)||(1538374-1538467)
chr5 (181-242)||(23247423-23247484)
chr5 (151-243)||(5731991-5732083)
chr5 (181-237)||(11845878-11845934)
chr5 (151-243)||(19572668-19572760)
chr5 (190-250)||(24653875-24653935)
chr5 (151-243)||(30995065-30995157)
chr5 (151-233)||(1826801-1826883)
chr5 (181-243)||(1898975-1899037)
chr5 (181-243)||(13664234-13664296)
chr5 (181-243)||(25417254-25417316)
chr5 (149-199)||(26077083-26077133)
chr5 (149-243)||(37263183-37263276)
chr5 (148-242)||(42086268-42086362)
chr5 (149-222)||(6767143-6767216)
chr5 (149-222)||(35813090-35813163)
chr5 (151-243)||(9812816-9812908)
chr5 (155-243)||(25950653-25950741)
chr5 (207-243)||(40060296-40060332)
[»] chr3 (33 HSPs)
chr3 (150-243)||(35315898-35315991)
chr3 (148-236)||(11687188-11687276)
chr3 (187-243)||(7328823-7328879)
chr3 (150-250)||(51060346-51060446)
chr3 (187-250)||(47303554-47303617)
chr3 (150-250)||(29127861-29127961)
chr3 (190-250)||(54237430-54237490)
chr3 (190-245)||(26590336-26590391)
chr3 (149-243)||(10040498-10040591)
chr3 (181-250)||(31072851-31072920)
chr3 (152-237)||(35923701-35923786)
chr3 (150-243)||(45877396-45877489)
chr3 (147-243)||(10855323-10855419)
chr3 (187-243)||(30767319-30767375)
chr3 (155-243)||(47219091-47219179)
chr3 (150-245)||(13893868-13893963)
chr3 (150-241)||(40944825-40944916)
chr3 (148-243)||(48341960-48342055)
chr3 (149-243)||(25294901-25294995)
chr3 (151-237)||(49543462-49543548)
chr3 (181-243)||(53649700-53649762)
chr3 (181-242)||(928573-928634)
chr3 (149-242)||(26207874-26207967)
chr3 (181-242)||(30735018-30735079)
chr3 (151-204)||(32873659-32873712)
chr3 (155-243)||(3136766-3136853)
chr3 (151-243)||(7612998-7613090)
chr3 (149-245)||(24146398-24146494)
chr3 (187-243)||(29135892-29135948)
chr3 (151-243)||(29762227-29762319)
chr3 (150-242)||(41630585-41630677)
chr3 (146-242)||(51683027-51683123)
chr3 (151-243)||(54261169-54261261)
[»] chr2 (24 HSPs)
chr2 (150-243)||(8410073-8410166)
chr2 (150-243)||(331443-331536)
chr2 (181-237)||(10026693-10026749)
chr2 (181-243)||(34346358-34346420)
chr2 (150-250)||(34356148-34356248)
chr2 (154-250)||(37560119-37560215)
chr2 (151-243)||(38962706-38962798)
chr2 (149-243)||(21180385-21180479)
chr2 (181-242)||(15234133-15234194)
chr2 (150-243)||(38005344-38005437)
chr2 (150-243)||(42770722-42770815)
chr2 (151-243)||(6358222-6358314)
chr2 (150-242)||(14169681-14169773)
chr2 (150-250)||(19976871-19976971)
chr2 (150-241)||(2550810-2550901)
chr2 (151-245)||(2528410-2528504)
chr2 (151-245)||(3811760-3811854)
chr2 (181-243)||(41220608-41220670)
chr2 (184-237)||(3848991-3849044)
chr2 (187-236)||(13026489-13026538)
chr2 (181-242)||(41187682-41187743)
chr2 (181-237)||(11069851-11069907)
chr2 (207-243)||(28616450-28616486)
chr2 (151-243)||(29422158-29422250)
[»] chr8 (21 HSPs)
chr8 (151-243)||(6940505-6940597)
chr8 (149-243)||(14666142-14666236)
chr8 (150-242)||(33401871-33401963)
chr8 (148-230)||(14846520-14846602)
chr8 (149-243)||(34846759-34846852)
chr8 (150-243)||(6100418-6100511)
chr8 (151-243)||(9860066-9860159)
chr8 (181-242)||(17981418-17981479)
chr8 (151-243)||(2467189-2467281)
chr8 (151-243)||(13358969-13359061)
chr8 (151-243)||(15884627-15884718)
chr8 (181-245)||(22276549-22276613)
chr8 (187-243)||(34710638-34710694)
chr8 (151-243)||(38922485-38922577)
chr8 (187-243)||(44031511-44031567)
chr8 (147-222)||(22810023-22810098)
chr8 (151-242)||(36914505-36914596)
chr8 (149-243)||(1013048-1013142)
chr8 (181-243)||(3418584-3418646)
chr8 (150-236)||(44893356-44893442)
chr8 (181-237)||(13085501-13085557)
[»] chr1 (28 HSPs)
chr1 (148-242)||(10336457-10336551)
chr1 (149-243)||(18915809-18915903)
chr1 (171-242)||(18649425-18649496)
chr1 (150-243)||(32142918-32143010)
chr1 (181-243)||(8763965-8764027)
chr1 (181-243)||(34334367-34334429)
chr1 (152-250)||(41663921-41664019)
chr1 (31-77)||(45597512-45597558)
chr1 (155-250)||(32819-32914)
chr1 (181-243)||(30927799-30927861)
chr1 (151-236)||(31576626-31576711)
chr1 (181-242)||(50503434-50503495)
chr1 (151-243)||(17642076-17642168)
chr1 (187-243)||(42710210-42710266)
chr1 (163-243)||(45361954-45362034)
chr1 (150-242)||(48798143-48798235)
chr1 (154-237)||(5144213-5144296)
chr1 (151-222)||(9853370-9853440)
chr1 (151-242)||(51437413-51437504)
chr1 (149-243)||(5855464-5855558)
chr1 (151-245)||(40226312-40226406)
chr1 (181-250)||(26325786-26325855)
chr1 (182-243)||(43959893-43959954)
chr1 (149-241)||(892371-892463)
chr1 (150-222)||(1764282-1764354)
chr1 (183-243)||(14254340-14254400)
chr1 (151-243)||(33418187-33418279)
chr1 (151-243)||(49078058-49078150)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-250)||(271138-271207)
[»] chr7 (19 HSPs)
chr7 (150-243)||(18785614-18785707)
chr7 (151-250)||(43925458-43925557)
chr7 (149-243)||(47341820-47341914)
chr7 (147-236)||(14650259-14650348)
chr7 (151-243)||(22268100-22268192)
chr7 (187-243)||(38578938-38578994)
chr7 (181-243)||(1605917-1605979)
chr7 (181-243)||(10047947-10048009)
chr7 (181-243)||(22973943-22974005)
chr7 (181-243)||(27028255-27028317)
chr7 (150-243)||(48804628-48804721)
chr7 (181-241)||(9685715-9685775)
chr7 (181-243)||(13095834-13095896)
chr7 (151-237)||(16802069-16802155)
chr7 (181-243)||(22993438-22993500)
chr7 (181-250)||(21530724-21530793)
chr7 (150-243)||(26423358-26423451)
chr7 (153-242)||(34659174-34659263)
chr7 (150-243)||(45447915-45448008)
[»] scaffold0006 (1 HSPs)
scaffold0006 (151-243)||(68463-68555)
[»] chr4 (22 HSPs)
chr4 (151-243)||(1940845-1940937)
chr4 (151-243)||(47078406-47078498)
chr4 (151-250)||(55920982-55921081)
chr4 (149-243)||(29895733-29895827)
chr4 (149-243)||(52950028-52950122)
chr4 (150-243)||(1446773-1446866)
chr4 (151-239)||(6779159-6779247)
chr4 (191-250)||(40780925-40780984)
chr4 (148-243)||(41339466-41339561)
chr4 (181-242)||(36145287-36145348)
chr4 (181-241)||(13552092-13552152)
chr4 (170-222)||(36262857-36262909)
chr4 (148-243)||(7000469-7000564)
chr4 (150-237)||(53599007-53599094)
chr4 (168-242)||(24850699-24850772)
chr4 (181-243)||(41162953-41163015)
chr4 (181-243)||(42722648-42722710)
chr4 (151-236)||(13073486-13073571)
chr4 (150-243)||(38075380-38075473)
chr4 (187-243)||(3159540-3159596)
chr4 (187-243)||(15732519-15732575)
chr4 (187-243)||(43468331-43468387)
[»] chr6 (13 HSPs)
chr6 (151-242)||(9179808-9179899)
chr6 (154-242)||(9147251-9147339)
chr6 (181-243)||(5253294-5253356)
chr6 (181-243)||(6606168-6606230)
chr6 (181-243)||(13036075-13036137)
chr6 (181-243)||(26476434-26476496)
chr6 (187-243)||(8932644-8932700)
chr6 (187-243)||(8944110-8944166)
chr6 (147-222)||(11142546-11142621)
chr6 (150-243)||(21898594-21898687)
chr6 (150-222)||(29333230-29333302)
chr6 (149-237)||(33859396-33859484)
chr6 (181-237)||(34954696-34954752)
[»] scaffold0029 (1 HSPs)
scaffold0029 (151-245)||(40990-41084)
[»] scaffold0002 (2 HSPs)
scaffold0002 (181-242)||(546-607)
scaffold0002 (150-245)||(412095-412190)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 4016533 - 4016326
Alignment:
Q  29 acattgagttgcccttgcaaaatttggttcattgaatttttaatatcatggatctatggttataatgcacttgtgacttgtgtatgggtacacaatttat 128  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  4016533 acattaagttgcccttgtaaaatttggttcattgaatttttaatatcatggatctatggttataatgcacttgtg-------tatgggtacacaatttat 4016441  T
Q  129 gaactctaaaagccaccgttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagg 228  Q
    | ||||||||||| |||||||||||||||||||||||| | |||||| || |||||||||||||||||||||| |  |||||||||||||||||||||||    
T  4016440 gtactctaaaagctaccgttttaaccaagttgtatgggctccagtggcaagaagctcattccaaggacgtacctgagaaatatcgggttcgattatcagg 4016341  T
Q  229 gggaacaacacttgg 243  Q
    |||||||||||||||    
T  4016340 gggaacaacacttgg 4016326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 18136445 - 18136349
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||||||||||| |||| | |||||| ||  ||||| |||||| |||||| ||||| |||| |||||||||||  |||||||||||||||||||||    
T  18136445 ttaaccaagttgtttgggctccagtggcaaggagctccttccaaagacgtatccggagaataccgggttcgattcccagggggaacaacacttggtc 18136349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 35403678 - 35403583
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| |||| |||| | |||||| ||  ||||| |||||||||||||| ||| ||||| ||||||||||| | |||||||||||| |||||    
T  35403678 tttaaccaacttgtttgggctccagtggcaaggagctccttccaaggacgtactcgggaaataccgggttcgattctaagggggaacaacgcttgg 35403583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 28857072 - 28857164
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||| ||||||  |||| |||||||||||  |||||||||||||||||||    
T  28857072 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgcacccggggaataccgggttcgattcccagggggaacaacacttgg 28857164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 39728331 - 39728423
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||| ||  ||||| ||||||| ||||||||||  |||| | |||||||||||||| || ||||||||||||    
T  39728331 aaccaagttgtttgggctccagtggcaaggagctctttccaagaacgtacccggggaataccaggttcgattatcagaggaaacaacacttgg 39728423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 3654075 - 3654004
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    ||||||||||| |||| | |||||  ||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  3654075 aaccaagttgtttgggctccagtgacaatgagctctttccaaggacgtacccggagaataccgggttcgatt 3654004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 14974457 - 14974395
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| ||||||||| ||||| |||||||||||||||| | | ||||||||||| ||||    
T  14974457 agctcattctaaggacgtatccggagaatatcgggttcgattctaaaggggaacaacatttgg 14974395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 1538374 - 1538467
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | |||||| ||  ||||| |||| ||||||||  |||  |||| |||||||||||  |||||||||||||||||||    
T  1538374 taaccaagttgtttgggctccagtggcaaggagctccttccgaggacgtattcggggaataccgggttcgattcccagggggaacaacacttgg 1538467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 23247484 - 23247423
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||||||||||||| ||  ||||||||||||||||  |||| |||||||| ||||    
T  23247484 agctcattccaaggacgtacctggggaatatcgggttcgattcccaggaggaacaacgcttg 23247423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 5732083 - 5731991
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||  |||| |||||||| |||||    
T  5732083 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttgg 5731991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 11845934 - 11845878
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||| |||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  11845934 agctccttccaaggacgtacccgagaaatatcgggttcgatttcgagggggaacaac 11845878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 19572668 - 19572760
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||| ||||  |||||||||||||||||||    
T  19572668 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttagattcccagggggaacaacacttgg 19572760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 24653935 - 24653875
Alignment:
Q  190 caaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    |||||||||| ||||  ||||| |||||||||| |||||| ||||||||||||||| ||||    
T  24653935 caaggacgtatccggggaatatagggttcgattttcagggagaacaacacttggtcagtgc 24653875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 30995065 - 30995157
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  ||||||| ||||| ||  ||||| ||||||||||||||  ||  |||| | |||||||||  |||||||||||||||||||    
T  30995065 aaccaagttgcctgggttttagtggcaaggagctccttccaaggacgtacatggggaataccaggttcgattcccagggggaacaacacttgg 30995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 1826801 - 1826883
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaa 233  Q
    ||||||||||| |||| |||||| | ||| ||||| |||||| ||||||| |||  |||||| ||||||||| ||||| ||||    
T  1826801 aaccaagttgtttgggcttcagtagcaatgagctccttccaaagacgtactcggggaatatcaggttcgattctcaggaggaa 1826883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 1898975 - 1899037
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||| ||||||||  |||| |||||||||||  ||||||||||||| |||||    
T  1898975 agctccttccaaggatgtacccggggaataccgggttcgattcccagggggaacaacgcttgg 1899037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 13664234 - 13664296
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||| |  |  |||| ||| ||||||||||||||||||||||||||||    
T  13664234 agctccttccaaggacgtatctagggaataccggattcgattatcagggggaacaacacttgg 13664296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 25417316 - 25417254
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| |||||||||||||| |||  |||| |||||||||||  ||||||||||||| |||||    
T  25417316 agctccttccaaggacgtactcggggaataccgggttcgattcccagggggaacaacgcttgg 25417254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 26077083 - 26077133
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgta 199  Q
    ||||||||||||| |||| | |||||||||  |||||||||||||||||||    
T  26077083 ttaaccaagttgtttgggctccagtggtaaggagctcattccaaggacgta 26077133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 37263183 - 37263276
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  || || ||| ||||||||||||||  |||||||||||||||| ||| |||||||||| |||||    
T  37263183 ttaaccaagttgcttgggctccagtggcaaggagttccttctaaggacgtacccggggaatatcgggttcgattctca-ggggaacaacgcttgg 37263276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 42086268 - 42086362
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||||  |||| | | |||| ||  ||||| |||||||||||||||||   |||| |||||||||||  ||||||||||||| ||||    
T  42086268 tttaaccaagttgcttgggctccggtggcaaggagctccttccaaggacgtacccgaggaataccgggttcgattcccagggggaacaacgcttg 42086362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 6767216 - 6767143
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    ||||||||||||  |||| | |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||    
T  6767216 ttaaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgatt 6767143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 35813163 - 35813090
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    |||| |||||||| |||| | | |||| || ||||||||||||||||||||||||   |||| |||||||||||    
T  35813163 ttaatcaagttgtttgggctgcggtggcaagaagctcattccaaggacgtacccgaggaataccgggttcgatt 35813090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 9812816 - 9812908
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||  | |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||   ||| |||||||| |||||    
T  9812816 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttgg 9812908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 25950741 - 25950653
Alignment:
Q  155 aagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||| |||| | |||||||||  ||||| ||| |||||||||| |||  |||||| |||| |||| ||| ||| ||||||||||||    
T  25950741 aagttgtttgggctccagtggtaaggagctccttcaaaggacgtactcggggaatatcaggtttgattttcaagggaaacaacacttgg 25950653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 40060296 - 40060332
Alignment:
Q  207 aatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  40060296 aataccgggttcgattttcagggggaacaacacttgg 40060332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 35315898 - 35315991
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | |||||| ||  ||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  35315898 taaccaagttgtttgggctccagtggcaaagagctccttccaaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttgg 35315991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 11687276 - 11687188
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    |||||||||||||| |||| | |||||| || |||||| ||||||||||||||| ||| |||| |||||| |||| |||||||||||||    
T  11687276 tttaaccaagttgtttgggctccagtggcaagaagctccttccaaggacgtacctggagaataccgggtttgattctcagggggaacaa 11687188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 7328823 - 7328879
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  7328823 ttccaaggacgtacccgggaaataccgggttcgattcccagggggaacaacacttgg 7328879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 51060446 - 51060346
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtg 249  Q
    |||||||||||| |||  | |||||| ||  ||||| |||||||||  || ||||  |||||||||||||||| |||||||||||||||||||||| |||    
T  51060446 taaccaagttgtttggactccagtggcaaatagctccttccaaggatctatccggggaatatcgggttcgattctcagggggaacaacacttggtcagtg 51060347  T
Q  250 c 250  Q
    |    
T  51060346 c 51060346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 47303617 - 47303554
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||||||||||| ||||||||||||||||| ||||  |||| |||||||||||||||| ||||    
T  47303617 ttccaaggacgtatccggaaaatatcgggtttgattcccaggaggaacaacacttggtcagtgc 47303554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 29127861 - 29127961
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtg 249  Q
    |||||||||||| |||| | |||||| ||  || || ||||||||||||| | ||  ||||||||||||||||  ||||| ||||||||||||||| |||    
T  29127861 taaccaagttgtttgggctccagtggcaaggagatccttccaaggacgtatctggggaatatcgggttcgatttccagggagaacaacacttggtcagtg 29127960  T
Q  250 c 250  Q
    |    
T  29127961 c 29127961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 54237430 - 54237490
Alignment:
Q  190 caaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    |||||||||| |||| |||||||||| |||||| |||||| ||||||||||||||| ||||    
T  54237430 caaggacgtatccgggaaatatcggggtcgattttcagggagaacaacacttggtcagtgc 54237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 26590391 - 26590336
Alignment:
Q  190 caaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    |||||||||||||| | ||||| |||||||||| |||||||||||||| |||||||    
T  26590391 caaggacgtacccgaagaatattgggttcgattctcagggggaacaacgcttggtc 26590336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 10040498 - 10040591
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||| ||| ||||||||||||||  |||||||||||||||| ||| |||||||||| |||||    
T  10040498 ttaaccaagttgcttgggctccagtggcaaggagctccttctaaggacgtacccggggaatatcgggttcgattctca-ggggaacaacgcttgg 10040591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 31072851 - 31072920
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||| || |||||||||||||||| |||| | |||||||||  ||||||||||||| ||||||| ||||    
T  31072851 agctcctttcaaggacgtacccggagaataccaggttcgatttccagggggaacaacgcttggtcagtgc 31072920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 35923786 - 35923701
Alignment:
Q  152 accaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    |||||||||| |||| |  ||||| ||| ||||||||||||||||||||| ||| |||| | |||||||||   ||||||||||||    
T  35923786 accaagttgtttgggctctagtggcaatgagctcattccaaggacgtacctggagaataccaggttcgattcatagggggaacaac 35923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 45877396 - 45877489
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | |||||| ||  ||| | ||||||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||    
T  45877396 taaccaagttgtttgggctccagtggcaaggagccccttccaaggacgtatccggggaataccgggttcgatttccaggggaaacaacacttgg 45877489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 10855323 - 10855419
Alignment:
Q  147 ttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||||| |||| | |||||| ||  ||||| ||||||||| ||||  || ||||| |||||| ||||  ||||||||||||| |||||    
T  10855323 ttttaaccaagttgtttgggctccagtggcaaggagctccttccaaggatgtacttgggaaataccgggtttgatttccagggggaacaacgcttgg 10855419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 30767375 - 30767319
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| ||||| ||  ||||||||||||||||  |||||||||||||||||||    
T  30767375 ttccaaggatgtacctggggaatatcgggttcgatttccagggggaacaacacttgg 30767319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 47219091 - 47219179
Alignment:
Q  155 aagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||||||| ||||  |||| | |||||||||  || ||| |||||| |||||    
T  47219091 aagttgtttggatttcagtggtaatgagctctttccaaggacgtatccggggaataccaggttcgattcccaagggaaacaacgcttgg 47219179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 13893868 - 13893963
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    |||||||||||| |||| | |||||| ||  ||||| ||||||||||||  ||||  |||| |||||| ||||  ||||||||||||| |||||||    
T  13893868 taaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtgtccggggaataccgggttggatttccagggggaacaacgcttggtc 13893963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 40944825 - 40944916
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacactt 241  Q
    |||||||||||  |||| | | |||| || |||||| ||||||||||||| || || |||| || ||||||||  |||||||||||||||||    
T  40944825 taaccaagttgcttgggctccggtggcaagaagctccttccaaggacgtatccagagaataccgagttcgattcccagggggaacaacactt 40944916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 48341960 - 48342055
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||| |||| | |||||| ||  ||||| ||||||||||||||| ||  |||| ||||||| |||   |||||||||||| |||||    
T  48341960 tttaaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtacctggggaataccgggttctattcctagggggaacaacgcttgg 48342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 25294901 - 25294995
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||| |||| || |||| ||||||||||||    
T  25294901 ttaaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggtttgattctctggggaaacaacacttgg 25294995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 49543462 - 49543548
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    |||||| |||| |||| || ||||| ||  ||||| ||||||||||||| || |  |||||||||||||||| ||| ||||||||||    
T  49543462 aaccaatttgtttgggctttagtggcaaggagctccttccaaggacgtatcccgggaatatcgggttcgattctcatggggaacaac 49543548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 53649700 - 53649762
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| |||||||||||||  |||  |||| ||||||||||| |||||| |||||||||||||    
T  53649700 agctccttccaaggacgtattcggggaataccgggttcgattctcagggtgaacaacacttgg 53649762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 928573 - 928634
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||||||||||||  |  |||| | | ||||||| |||||||||||||||||||    
T  928573 agctcattccaaggacgtacctagggaataccagattcgattctcagggggaacaacacttg 928634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 26207967 - 26207874
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||||  |||| | |||||| ||  ||||| ||||||||| ||||||||  |||| |||||||||||  || |||||||||| ||||    
T  26207967 ttaaccaagttgcttgggctccagtggcaaggagctccttccaaggatgtacccggggaataccgggttcgattcccacggggaacaacgcttg 26207874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 30735079 - 30735018
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||||||||| || |||  |||| || |||||||| |||||||||||||| ||||    
T  30735079 agctcattccaaggacgcactcggggaataccgagttcgattctcagggggaacaacgcttg 30735018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 32873712 - 32873659
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccgg 204  Q
    ||||||||||| |||| | |||||| ||  ||||||||||||||||||||||||    
T  32873712 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgtacccgg 32873659  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 3136853 - 3136766
Alignment:
Q  155 aagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||| |||| | | |||| || |||||| || |||||||||||||||  |||| ||| ||||||| ||| ||||||||||||||||    
T  3136853 aagttgtttgggctcccgtggcaagaagctcctttcaaggacgtacccggggaataccggattcgattttca-ggggaacaacacttgg 3136766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 7613090 - 7612998
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||| ||| |||  |||||||| ||  ||||| ||||||||||||||  ||  |||| |||||||||||  ||||||||||||| |||||    
T  7613090 aaccaagctgtttggacttcagtggcaaggagctccttccaaggacgtacttggggaataccgggttcgattcccagggggaacaacgcttgg 7612998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 24146494 - 24146398
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||||||||||| ||| ||||||||  ||  ||||| |||||||||| || | ||  ||||||||||| |||| ||| ||  ||||||||||||||    
T  24146494 ttaaccaagttgtttggatttcagtgacaaggagctccttccaaggacatatctggggaatatcgggtttgattctcaaggataacaacacttggtc 24146398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 29135892 - 29135948
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| ||||  |||| ||| |||||||  |||||||||||||||||||    
T  29135892 ttccaaggacgtatccggggaataccggattcgattcccagggggaacaacacttgg 29135948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 29762319 - 29762227
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||| |||  |||  |||||||||| ||||| ||||||| ||||||||||||    
T  29762319 aaccaagttgcttgggctccagtggcaaggagctccttccaaggatgtattcggggaatatcgggtccgattctcaggggcaacaacacttgg 29762227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 41630677 - 41630585
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||| |||| | |||||  ||  ||||| ||||| ||||||| |||||||||| ||||||| |||  || |||||||||| ||||    
T  41630677 taaccaagttgtttgggctccagtgacaaggagctccttccatggacgtaaccggaaaataccgggttcaattcccaaggggaacaacgcttg 41630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 51683123 - 51683027
Alignment:
Q  146 gttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||||||| |||| | ||||||  |  ||||| |||||| |||||| ||||  |||| | |||||||||  ||||||||||||| ||||    
T  51683123 gttttaaccaagttgtttgggctccagtggcgaggagctccttccaaagacgtatccggggaataccaggttcgattcccagggggaacaacgcttg 51683027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 54261169 - 54261261
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||| ||  ||||| ||||||||||||||| ||  |||| |||||||||||   ||| |||||||| |||||    
T  54261169 aaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtacctggggaataccgggttcgattcctaggaggaacaacgcttgg 54261261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 8410073 - 8410166
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||  ||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  8410073 taaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttgg 8410166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 331443 - 331536
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||| ||||| ||||||||||||||||||  |||| |||||||||||  |||||||||||||||||||    
T  331443 taaccaagttgcttgggctccagtggcaatgagctctttccaaggacgtacccggggaataccgggttcgattcccagggggaacaacacttgg 331536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 10026749 - 10026693
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  10026749 agctccttccaaggacgtactcggaaaataccgggttcgattctcagggggaacaac 10026693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 34346420 - 34346358
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||||||||||| ||  ||||  ||||| |||||||||||||||||||||||||    
T  34346420 agctcattccaaggacgtacctggggaatactgggtttgattatcagggggaacaacacttgg 34346358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 34356148 - 34356248
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtg 249  Q
    |||||||||||| |||| | |||||| ||  ||||  ||||||||||||| | ||  |||| |||||||||||  ||||||||||||||||||||| |||    
T  34356148 taaccaagttgtttgggctccagtggcaaggagctatttccaaggacgtatctggggaataccgggttcgatttccagggggaacaacacttggtcagtg 34356247  T
Q  250 c 250  Q
    |    
T  34356248 c 34356248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 37560119 - 37560215
Alignment:
Q  154 caagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    |||||||| |||| | ||||||||| |||||| |||||||||||||||||   |||| | ||||||||| ||| ||||||||||  |||||| ||||    
T  37560119 caagttgtttgggctccagtggtaagaagctccttccaaggacgtacccgaggaataccaggttcgattctcaaggggaacaacgtttggtcagtgc 37560215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 38962706 - 38962798
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||  | |||||||||  |||||||| |||||||||| ||||  |||| ||||||||||| ||||| |||||||| |||||    
T  38962706 aaccaagttgtttggactccagtggtaaggagctcatttcaaggacgtatccggggaataccgggttcgattttcaggaggaacaacgcttgg 38962798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 21180479 - 21180385
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| |||| | |||||| ||  ||||| ||||||||||||||||| | |||| ||| |||||||  || || |||||||||||||    
T  21180479 ttaaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtacccgaagaataccggattcgattcccatggagaacaacacttgg 21180385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 15234194 - 15234133
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||| ||||||||||||||||||  ||||   ||||||||| |||||||||||||||||||    
T  15234194 agctccttccaaggacgtacccggggaatactaggttcgattctcagggggaacaacacttg 15234133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 38005344 - 38005437
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | |||||| ||  ||||| ||||||||||||||||||  ||||  ||||||||||  || |||||||||| |||||    
T  38005344 taaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtacccggggaatactgggttcgattcccaaggggaacaacgcttgg 38005437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 42770815 - 42770722
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||  ||||| ||||||||||||| |||  ||||| ||||||| ||| |||||||||||||| |||||    
T  42770815 taaccaagttgcttgggctccagtggcaaagagctccttccaaggacgtatccgagaaataccgggttcaattctcagggggaacaacgcttgg 42770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 6358314 - 6358222
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||| |||||| |||| | |||||| || |||||||||| ||||||||| ||||  |||| | | |||||||  |||||||||||||||||||    
T  6358314 aaccgagttgtttgggctccagtggcaagaagctcattcaaaggacgtatccggggaataccagattcgatttccagggggaacaacacttgg 6358222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 14169773 - 14169681
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||| |||| | |||||  ||  || || |||||||||||||  |||  |||||||||||||||| || ||||||||||||||||    
T  14169773 taaccaagttgtttgggctccagtgacaaggagatctttccaaggacgtattcggggaatatcgggttcgattctccgggggaacaacacttg 14169681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 19976971 - 19976871
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtg 249  Q
    ||||||| |||| |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| ||||||||||| |||||||||| |||  |||||| |||    
T  19976971 taaccaaattgtttgggctccagtggcaagtagctctttccaaggacgtatccggggaataccgggttcgattttcagggggaataacgtttggtcagtg 19976872  T
Q  250 c 250  Q
    |    
T  19976871 c 19976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 2550810 - 2550901
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacactt 241  Q
    |||||||||||  |||| | |||||| ||  ||||| || |||||||||| ||||  ||||||||||||||||  |||| ||||||||||||    
T  2550810 taaccaagttgcttgggctccagtggcaaggagctccttacaaggacgtatccggggaatatcgggttcgattcccaggaggaacaacactt 2550901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 2528504 - 2528410
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    |||||| |||| |||| | |||||| ||| ||||| |||||||||||||| ||   || | |||||||||||  ||||||||||||| |||||||    
T  2528504 aaccaaattgtttgggctccagtggcaatgagctccttccaaggacgtactcgaggaacaccgggttcgattcccagggggaacaacgcttggtc 2528410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 3811854 - 3811760
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||||||||| |||  |||| ||| ||  | ||| |||||||||||||| ||   ||||||||||||||||  ||| |||||||||||||||||    
T  3811854 aaccaagttgtttggtcttcaatggcaaggaactccttccaaggacgtactcgaggaatatcgggttcgattcccagagggaacaacacttggtc 3811760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 41220608 - 41220670
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||||||  |||| |||||||||||  |||| |||||||| |||||    
T  41220608 agctccttccaaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttgg 41220670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 3849044 - 3848991
Alignment:
Q  184 tcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||| |||||||||| | ||| |||| ||||||||||||||||||| ||||||    
T  3849044 tcatttcaaggacgtatctggagaataccgggttcgattatcaggggaaacaac 3848991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 13026538 - 13026489
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    ||||||||||||| || |  |||||||||||||||||||||| |||||||    
T  13026538 ttccaaggacgtatccagggaatatcgggttcgattatcaggaggaacaa 13026489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 41187682 - 41187743
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||| ||| ||||||||| | | | |||| ||||||||||||| |||||||||||||||||    
T  41187682 agctccttctaaggacgtatctgaagaataccgggttcgattatgagggggaacaacacttg 41187743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 11069851 - 11069907
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||||||||||||||||||||||  |||| | |||||||||   ||||||||||||    
T  11069851 agctcattccaaggacgtacccggggaataccaggttcgattccgagggggaacaac 11069907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 28616486 - 28616450
Alignment:
Q  207 aatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||||| |||||||||| |||||||||    
T  28616486 aatatcgggttcgattttcagggggaataacacttgg 28616450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 29422158 - 29422250
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||| | ||  ||||| || |||||||||||||||  ||||  ||||||||||  ||| |||||||||||||||    
T  29422158 aaccaagttgtttgggctccagtagcaaggagctcctttcaaggacgtacccggggaatactgggttcgatttccagagggaacaacacttgg 29422250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 6940505 - 6940597
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||||||  ||||||||||||||| ||| ||||||||||||||||||||||  |||| |||||||| |||||    
T  6940505 aaccaagttgtttgggctccagtggtaaggagctcattccaaggaggtatccggaaaatatcgggttcgatttccaggtggaacaacgcttgg 6940597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 14666236 - 14666142
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||||||||||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||    
T  14666236 ttaaccaagttgcttgggctccagtggcaaggagctcattccaaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttgg 14666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 33401963 - 33401871
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||| ||||||| |||| | |||||| ||  ||||| || ||||||||||| |||  |||| ||||||||||| |||||||||||||||||||    
T  33401963 taactaagttgtttgggctccagtggcaaggagctcctttcaaggacgtactcggggaataccgggttcgattttcagggggaacaacacttg 33401871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 14846520 - 14846602
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggg 230  Q
    |||||||||||||| |||| | || ||| || |||||| ||| ||||||||||||||  |||| ||||||||||| |||||||    
T  14846520 tttaaccaagttgtttgggctccactggcaagaagctccttctaaggacgtacccggggaataccgggttcgattctcagggg 14846602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 34846759 - 34846852
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| |||| | |||||| ||  ||||||||||||||||||||||||  |||| |||||||||||  || || ||||||| |||||    
T  34846759 ttaaccaagttgtttgggctccagtggcaaggagctcattccaaggacgtacccgg-gaataccgggttcgattcccatggtgaacaacgcttgg 34846852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 6100418 - 6100511
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| |||||||| ||  ||||| || |||||||||| ||||  |||| |||||||||||  |||| |||||||| |||||    
T  6100418 taaccaagttgtttgggcttcagtggcaaggagctcctttcaaggacgtatccggggaataccgggttcgattcccaggaggaacaacgcttgg 6100511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 9860159 - 9860066
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaa-aatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||| ||  ||||| ||||||||||||| ||||   |||| |||||||||||  |||||||||||||||||||    
T  9860159 aaccaagttgtttgggatccagtggcaaagagctccttccaaggacgtatccgggggaataccgggttcgattcccagggggaacaacacttgg 9860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 17981418 - 17981479
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||| ||||||||| |||||||| ||||| |||||||||||  ||||||||||||| ||||    
T  17981418 agctccttccaaggatgtacccgggaaataccgggttcgattcccagggggaacaactcttg 17981479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 2467281 - 2467189
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||||||||  ||||||||||||| |||||    
T  2467281 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttcgatttccagggggaacaactcttgg 2467189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 13358969 - 13359061
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| |||||||||||  ||||| |||||| || ||  |||||||||| ||||||||||| ||||  |||||||| |||||    
T  13358969 aaccaagttgcttgggcttcagtggtaaggagctccttccaaagatgtgtccggaaaataccgggttcgattctcagaaggaacaacgcttgg 13359061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 15884718 - 15884627
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||||||  ||||| ||||||||||||||| ||  |||| |||||||||||  || ||||||||||||||||    
T  15884718 aaccaagttgattgggctccagtggtaaggagctccttccaaggacgtacctggggaataccgggttcgattccca-ggggaacaacacttgg 15884627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 22276613 - 22276549
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||| |||||||||||||||| ||||||| ||||||| |||   ||| ||||||||||||||||    
T  22276613 agctccttccaaggacgtacccagaaaataccgggttctattcctaggaggaacaacacttggtc 22276549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 34710694 - 34710638
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||| ||||||||| ||| |||||||  |||||| ||||||||||||    
T  34710694 ttccaaggacgtactcggaaaataccggattcgattcccaggggaaacaacacttgg 34710638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 38922577 - 38922485
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||  ||| ||||||||| |||||    
T  38922577 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcccagagggaacaacgcttgg 38922485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 44031567 - 44031511
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| ||| |||| |||||||||||||||||  ||||||||||||| |||||    
T  44031567 ttccaaggatgtaaccgggaaatatcgggttcgatttccagggggaacaacgcttgg 44031511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 22810023 - 22810098
Alignment:
Q  147 ttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    ||||||||||||||| |||| |  ||||| ||  ||||| ||||||||||||| ||||| || |||||||||||||    
T  22810023 ttttaaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtatccggagaacatcgggttcgatt 22810098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 36914596 - 36914505
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||| ||| ||| || || || |||||| ||| |||||||||| ||| ||||||||  ||||||| ||||| |||||||| ||||    
T  36914596 aaccaagttgtttggattttagcggcaagaagctccttctaaggacgtactcgggaaatatcgaattcgattttcaggaggaacaacgcttg 36914505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 1013142 - 1013048
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||  ||||||||||||| ||||  |||| |||||||||||  ||||||||||||| |||||    
T  1013142 ttaaccaagttgcttgggctccagtggcaaggagctttttccaaggacgtatccggggaataccgggttcgattcccagggggaacaacgcttgg 1013048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3418646 - 3418584
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||| | ||  |||||||||||||||| | ||| ||||||||||||||    
T  3418646 agctccttccaaggacgtatctggggaatatcgggttcgatttttaggaggaacaacacttgg 3418584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 44893442 - 44893356
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    |||||||||||| |||| | |||||| ||  ||||| ||||||||||||||||||  |||| ||||||| |||   |||||||||||    
T  44893442 taaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcaatttctagggggaacaa 44893356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 13085501 - 13085557
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||| ||||||||||||| ||||  |||| ||||||||||| |||| |||||||||    
T  13085501 agctccttccaaggacgtatccggggaataccgggttcgattctcagagggaacaac 13085557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 10336457 - 10336551
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||||||| | |||||| |||||| ||  ||||| |||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||    
T  10336457 tttaaccaagttatctgggttccagtggcaaggagctccttccaaagacgtatccggagaatatcgggttcgattttcagggggaacaacgcttg 10336551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 18915809 - 18915903
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| |||| |||||||| ||  ||||  ||||||||||||||||||  |||| |||||||||||  |||||||||||||||||||    
T  18915809 ttaaccaagttgtttgggcttcagtggcaaggagcttcttccaaggacgtacccggggaataccgggttcgattcccagggggaacaacacttgg 18915903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 18649496 - 18649425
Alignment:
Q  171 agtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||| ||||| ||||||||||||| | ||| |||||||||||||||| |||||||||||||| ||||    
T  18649496 agtggtaatgagctccttccaaggacgtatctggagaatatcgggttcgattttcagggggaacaacgcttg 18649425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 32143010 - 32142918
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||| ||||||| |||  |||||||| ||  |||||||||||||||||||||| | || || ||||||||||| ||||||||||||||||||||    
T  32143010 taacaaagttgtttggacttcagtggcaaagagctcattccaaggacgtaccctggaa-taccgggttcgattttcagggggaacaacacttgg 32142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 8763965 - 8764027
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||    
T  8763965 agctccttccaaggacgtacccggggaatatcgggttcgtttcccagggggaacaacacttgg 8764027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 34334429 - 34334367
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||||||||| ||||  |||| |||||||||||  |||||||||||||||||||    
T  34334429 agctcattccaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttgg 34334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 41664019 - 41663921
Alignment:
Q  152 accaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    |||||||||| |||| | |||||| ||  ||||| ||| ||||||||| ||||  |||| |||||||||||  ||||||||||||||||||||| ||||    
T  41664019 accaagttgtttgggctccagtggcaaggagctccttctaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggtcagtgc 41663921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 45597558 - 45597512
Alignment:
Q  31 attgagttgcccttgcaaaatttggttcattgaatttttaatatcat 77  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  45597558 attgagttgcccttgcaaaatctagttcattgaatttttaatatcat 45597512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 32819 - 32914
Alignment:
Q  155 aagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||||| |||| | |||||| ||| ||||| ||||||||||||||| ||  |||||||||| |||||  |||| |||||||| ||||||| ||||    
T  32819 aagttgtttgggctccagtggcaatgagctccttccaaggacgtaccgggggaatatcgggtccgattcccaggaggaacaacgcttggtcagtgc 32914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 30927861 - 30927799
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||| || |||||||||||||||||  ||| ||||||||| |||||    
T  30927861 agctccttccaaggacgtacctgggaaatatcgggttcgatttccagagggaacaacgcttgg 30927799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 31576711 - 31576626
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    ||||||||||| |||| |  ||||| ||  ||||||||| ||||||||| || ||||||| ||||||||||| ||||||| |||||    
T  31576711 aaccaagttgtttgggctctagtggcaaggagctcattctaaggacgtatcccgaaaataccgggttcgattctcaggggaaacaa 31576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 50503495 - 50503434
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||| || |||||||||| ||||  ||||||||||||||||  ||||||||||||||||||    
T  50503495 agctcctttcaaggacgtatccggggaatatcgggttcgattcccagggggaacaacacttg 50503434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 17642168 - 17642076
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||  ||  ||||| ||||| |||||||||| | |||||  ||||||||||  |||||||||||||||||||    
T  17642168 aaccaagttgtttgggctccagtgacaaggagctccttccacggacgtacccaggaaatactgggttcgattcccagggggaacaacacttgg 17642076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 42710266 - 42710210
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||| |||||| || ||||||||||||||||||| ||||||| ||||| ||||||    
T  42710266 ttccaaagacgtatccagaaaatatcgggttcgattttcaggggaaacaatacttgg 42710210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 45362034 - 45361954
Alignment:
Q  163 tgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||| |||||||| ||  ||||| |||||||||||||||| |  |||| ||||||||||| ||||| |||||||| |||||    
T  45362034 tgggcttcagtggcaaggagctccttccaaggacgtaccctgggaataccgggttcgattctcaggaggaacaacgcttgg 45361954  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 48798235 - 48798143
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||||  ||| | |||||| ||  ||||| |||||| |||||| ||||  ||||||||||||||||  ||||||||||||| ||||    
T  48798235 taaccaagttgttggggctccagtggcaaggagctccttccaatgacgtatccggggaatatcgggttcgatttccagggggaacaacgcttg 48798143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 5144296 - 5144213
Alignment:
Q  154 caagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    |||||||| |||| |||| ||||||||||||| || |||| ||||| | ||| |||||||| ||| ||| |||||| |||||||    
T  5144296 caagttgtttgggcttcaatggtaataagctcctttcaagaacgtatctggagaatatcggattcaattttcagggagaacaac 5144213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 9853440 - 9853370
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    ||||||||||| |||| | |||||| ||  ||||| ||||||||| |||||||||||||| |||||||||||    
T  9853440 aaccaagttgt-tgggctccagtggcaaggagctccttccaaggatgtacccggaaaataccgggttcgatt 9853370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 51437413 - 51437504
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||| |||| |||||||  ||| ||||| || |||||||||| |||   ||||||||||||||||  || |||||||||| ||||    
T  51437413 aaccaagttgtttgggcttcagtgacaatgagctcctttcaaggacgtatccgaggaatatcgggttcgattcccatggggaacaacgcttg 51437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 5855464 - 5855558
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| |||| | |||||| ||  ||||| |||||||||||||  |||  |||| |||||||||||  |||| |||||||| |||||    
T  5855464 ttaaccaagttgtttgggctccagtggcaaggagctccttccaaggacgtattcggggaataccgggttcgattcccaggaggaacaacgcttgg 5855558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 40226406 - 40226312
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||||||||  ||||||||||||| ||  ||||| |||||||||||||  || | ||||||   |||||||||||| || |||||| |||||||    
T  40226406 aaccaagttgattgggtttcagtggcaaggagctccttccaaggacgtattcgaagaatatcatattcgattatcagaggtaacaacgcttggtc 40226312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 26325786 - 26325855
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||| || |||||||||| |||   ||||||||||||||||  ||| ||||||||||||||||| ||||    
T  26325786 agctcctttcaaggacgtatccgaggaatatcgggttcgattcccagcgggaacaacacttggtcagtgc 26325855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 43959954 - 43959893
Alignment:
Q  182 gctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||| |||||| |||||||||||  |||||||||||| |||  ||||||||||||| |||||    
T  43959954 gctccttccaatgacgtacccggggaatatcgggttcaattcccagggggaacaacgcttgg 43959893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 892463 - 892371
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacactt 241  Q
    ||||| ||||||| |||| |||||||| ||  ||||| || ||||||||||  |||  |||| |||||||||||   ||||||||||||||||    
T  892463 ttaacgaagttgtttgggcttcagtggcaaggagctcctttcaaggacgtattcggggaataccgggttcgattcctagggggaacaacactt 892371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 1764354 - 1764282
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    |||| ||||||| |||| ||| |||| ||  ||||| |||||||||||||||||| ||||| ||| |||||||    
T  1764354 taactaagttgtttgggcttctgtggcaaggagctccttccaaggacgtacccgggaaataccggattcgatt 1764282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 14254400 - 14254340
Alignment:
Q  183 ctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||||||  |||  |||| || |||||||| |||||||||||||| |||||    
T  14254400 ctcattccaaggacgtattcggggaataccgagttcgattttcagggggaacaacgcttgg 14254340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 33418279 - 33418187
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||| ||  ||||| |||||| |||||||||||| |||| ||| |||||||   |||||| ||||| |||||    
T  33418279 aaccaagttgtttgggctccagtggcaaggagctccttccaaagacgtacccggagaataccggattcgattcctaggggggacaacgcttgg 33418187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 49078058 - 49078150
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||| | |||||| ||  ||||| ||| ||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||    
T  49078058 aaccaagttgcttgggctccagtggcaaggagctccttctaaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttgg 49078150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 271207 - 271138
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||| ||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||| ||||    
T  271207 agctccttccaaggacgtacccggagaatatcgggttcgattcccagggggaacaacgcttggtcagtgc 271138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 18785614 - 18785707
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| ||||| | |||||| || |||||| ||||||||||||||||||  |||| |||||||||||   ||||||||||||||||||    
T  18785614 taaccaagttgcatgggctccagtggcaagaagctccttccaaggacgtacccggggaataccgggttcgattcctagggggaacaacacttgg 18785707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 43925458 - 43925557
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||  ||||||||||||||||||||| ||||    
T  43925458 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggtcagtgc 43925557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 47341820 - 47341914
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||||||||||||||||||||||  |||| || ||||||||  |||||||||||||||||||    
T  47341820 ttaaccaagttgcttgggctccagtggcaaggagctcattccaaggacgtacccggggaataccgagttcgattcccagggggaacaacacttgg 47341914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 14650259 - 14650348
Alignment:
Q  147 ttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    ||||||||||||||| |||  |  ||||| ||  ||||| ||||||||||||||||||| ||||||||||||||||  |||| |||||||    
T  14650259 ttttaaccaagttgtttggactctagtggcaaggagctccttccaaggacgtacccggagaatatcgggttcgatttccaggaggaacaa 14650348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 22268192 - 22268100
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| | |||||| ||  ||||||||||||||||||||  ||  |||| |||||||||||  |||||||||||||| ||||    
T  22268192 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgtacttggggaataccgggttcgattcccagggggaacaacatttgg 22268100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 38578994 - 38578938
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||||||| |||||    
T  38578994 ttccaaggacgtacccggggaatatcgggttcgattcccagggggaacaacgcttgg 38578938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 1605917 - 1605979
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||||||| |||| | |||||||||  ||||||||||||| |||||    
T  1605917 agctccttccaaggacgtacccggagaatacctggttcgatttccagggggaacaacgcttgg 1605979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 10048009 - 10047947
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||| ||||  |||| |||||||||||  |||||||||||||||||||    
T  10048009 agctccttccaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttgg 10047947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 22973943 - 22974005
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| |||||||||||||| |||  |||| ||||||||||| |||||||||||||| |||||    
T  22973943 agctccttccaaggacgtactcggggaataccgggttcgattctcagggggaacaacgcttgg 22974005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 27028255 - 27028317
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| ||||||| || ||||| | |||||||||  |||||||||||||||||||    
T  27028255 agctcattccaagaacgtacctgggaaataccaggttcgatttccagggggaacaacacttgg 27028317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 48804628 - 48804721
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||||||||  || ||||||||||||||||    
T  48804628 taaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttcgattcccaaggggaacaacacttgg 48804721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 9685715 - 9685775
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacactt 241  Q
    ||||| ||||||| ||||| ||||  |||||||||||||||| ||||| ||||||||||||    
T  9685715 agctccttccaagcacgtatccggggaatatcgggttcgattctcaggaggaacaacactt 9685775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 13095834 - 13095896
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| || |||||||||||||||  |||| ||||||| |||  |||||||||||||||||||    
T  13095834 agctcctttcaaggacgtacccggggaataccgggttctattcccagggggaacaacacttgg 13095896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 16802069 - 16802155
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||||||||  |||| | |||||| ||| ||||| ||||||||||||||||||  |||| ||| ||||||| | ||| ||||||||    
T  16802069 aaccaagttgcctgggctccagtggcaatgagctccttccaaggacgtacccggggaataccggattcgattcttaggaggaacaac 16802155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 22993500 - 22993438
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||||||  ||||||||||||||||   ||| |||||||| |||||    
T  22993500 agctccttccaaggacgtacccggggaatatcgggttcgattccgaggaggaacaacgcttgg 22993438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 21530724 - 21530793
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||| ||||||||||||||| ||  ||||  ||||| ||||  ||||||||||||||||||||| ||||    
T  21530724 agctccttccaaggacgtacctggggaatactgggtttgattcccagggggaacaacacttggtcagtgc 21530793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 26423451 - 26423358
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | |||||| || || ||| ||||||||||||||||    |||| |||||||||||  |||||| |||||| |||||    
T  26423451 taaccaagttgtttgggctccagtggcaagaaactccttccaaggacgtacccaaggaataccgggttcgattcccaggggaaacaacgcttgg 26423358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 34659174 - 34659263
Alignment:
Q  153 ccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||| |||| | |||||| ||  ||||| ||||| ||| ||||||||  |||| ||||||||||| ||| |||||||||| ||||    
T  34659174 ccaagttgtttgggctccagtggcaaggagctccttccagggatgtacccggggaataccgggttcgattctcaaggggaacaacgcttg 34659263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 45447915 - 45448008
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  ||||||  ||||| ||  ||||| |||||||||||||||||  ||||| | |||||||||  ||||| ||||||| |||||    
T  45447915 taaccaagttgcttgggttctagtggcaaggagctccttccaaggacgtacccgagaaataccaggttcgatttccagggagaacaacgcttgg 45448008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 68463 - 68555
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| |  ||||| ||  ||||| |||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||    
T  68463 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgg 68555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 1940937 - 1940845
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||| |||| |  ||||| ||  ||||| |||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||    
T  1940937 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgg 1940845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 47078406 - 47078498
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||  |||||| |||||| ||  ||||| ||||||||||||||||||  |||| |||||||||||  ||||||||||||| |||||    
T  47078406 aaccaagttgcttgggttccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcccagggggaacaacgcttgg 47078498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 55920982 - 55921081
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    ||||||||||  |||| | |||||| ||  ||||| ||||||||||| ||||||  |||| |||||||||||  ||||||||||||||||||||| ||||    
T  55920982 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgcacccggggaataccgggttcgattcccagggggaacaacacttggtcagtgc 55921081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 29895733 - 29895827
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||||||||  |||||||||||||||||||    
T  29895733 ttaaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttgg 29895827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 52950028 - 52950122
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| |||| |  ||||| ||  ||||| ||||||||||||||| ||  ||||||||||||||||  ||||||||||||| |||||    
T  52950028 ttaaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtacctggggaatatcgggttcgattcccagggggaacaacgcttgg 52950122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 1446773 - 1446866
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||||||||  |||||||||||||||||||    
T  1446773 taaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttgg 1446866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 6779159 - 6779247
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacac 239  Q
    ||||||||||| |||| | |||||| ||  ||||  ||||||||||||||| ||| |||| |||||||||||  |||||||||||||||    
T  6779159 aaccaagttgtttgggctccagtggcaaggagcttcttccaaggacgtacctggagaataccgggttcgattcccagggggaacaacac 6779247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 40780984 - 40780925
Alignment:
Q  191 aaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtctgtgc 250  Q
    |||||||||  ||||||||||||||||||||| ||| |||||||||| ||||||| ||||    
T  40780984 aaggacgtattcggaaaatatcgggttcgattctcaaggggaacaacgcttggtcagtgc 40780925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 41339561 - 41339466
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||| |||| |  ||||| ||  ||||| ||||||||||||||||||| |||| ||||||||| |  || |||||||||| |||||    
T  41339561 tttaaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtacccggagaataccgggttcgactcccaaggggaacaacgcttgg 41339466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 36145348 - 36145287
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||||||||||||||||  |||| |||||||||||  |||||| |||||| ||||    
T  36145348 agctcattccaaggacgtacccggggaataccgggttcgattcccaggggaaacaacgcttg 36145287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 13552092 - 13552152
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacactt 241  Q
    ||||| ||||||| ||||| ||||  |||||||||||||||| ||||| ||||||||||||    
T  13552092 agctccttccaagcacgtatccggggaatatcgggttcgattctcaggaggaacaacactt 13552152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 36262909 - 36262857
Alignment:
Q  170 cagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    |||||| || |||||| ||||||||||||||||||| |||| |||||||||||    
T  36262909 cagtggcaagaagctccttccaaggacgtacccggagaataccgggttcgatt 36262857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 7000469 - 7000564
Alignment:
Q  148 tttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||||| |||| | |||||| || |||||| |||||||||||||| |||  |||| || ||||||||  ||||  ||||||| |||||    
T  7000469 tttaaccaagttgtttgggctacagtggcaagaagctccttccaaggacgtactcggggaataccgagttcgattcccaggaagaacaacgcttgg 7000564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 53599007 - 53599094
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    |||||||||||| |||| | || ||| ||  ||||| ||||||||||||||||||  |||| |||||||||||  |||| ||||||||    
T  53599007 taaccaagttgtttgggctccattggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcccaggaggaacaac 53599094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 24850772 - 24850699
Alignment:
Q  168 ttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||| ||  ||||||||||||||||||| |||| ||||| | | ||| ||||||| |||||||||||||||    
T  24850772 ttcagtggcaaggagctcattccaaggacgtatccgggaaataccagattcaattatca-ggggaacaacacttg 24850699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 41163015 - 41162953
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||| |||| ||||| || ||||||||  ||| |||||||||||||||    
T  41163015 agctccttccaaggacgtatccgggaaataccgagttcgatttccagagggaacaacacttgg 41162953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 42722710 - 42722648
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| |||||||||||||||||| ||||| ||||||| |||  |||| |||||||| |||||    
T  42722710 agctccttccaaggacgtacccgggaaataccgggttcaattcccaggaggaacaacgcttgg 42722648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 13073486 - 13073571
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaa 236  Q
    ||||||||||| |||| |  ||||| ||| ||||| ||||||||||||||| ||| |||| || ||||||||  || |||||||||    
T  13073486 aaccaagttgtttgggctctagtggcaatgagctccttccaaggacgtacctggagaataccgagttcgattcccatggggaacaa 13073571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 38075380 - 38075473
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||| |||| | ||| || ||  || || |||||||||||||  |||| |||| ||||||||||| ||||||| |||||| |||||    
T  38075380 taaccaagttgtttgggctccagcggcaaggagttccttccaaggacgtattcggagaataccgggttcgattctcaggggaaacaacgcttgg 38075473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 3159596 - 3159540
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| ||||| |||| ||||||||| |  ||||||||||||| |||||    
T  3159596 ttccaaggacgtatccggagaataccgggttcgacttccagggggaacaacgcttgg 3159540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 15732575 - 15732519
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||||||| ||||| |||| |||||||||||   | ||||||||||||||||    
T  15732575 ttccaaggacgtatccggagaataccgggttcgattcatatggggaacaacacttgg 15732519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 43468331 - 43468387
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||| ||||||||||  |||| |||||||||||  ||||||||||||| |||||    
T  43468331 ttccaagaacgtacccggggaataccgggttcgattcccagggggaacaacgcttgg 43468387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 9179899 - 9179808
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||||||||| |||| | |||||| ||  |||||||||||||||||||||| |  |||| |||||||||||  ||||||||||||||||||    
T  9179899 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgtacccagggaataccgggttcgattcccagggggaacaacacttg 9179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 9147251 - 9147339
Alignment:
Q  154 caagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    |||||||| |||| | |||||| ||  ||||||||||||||||||||| ||  ||||||||||||||||  |||||||||| |||||||    
T  9147251 caagttgtttgggctccagtgggaaggagctcattccaaggacgtacctggggaatatcgggttcgattcccagggggaacgacacttg 9147339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 5253356 - 5253294
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||||||  |||| |||||||||||  |||||||||||||||||||    
T  5253356 agctccttccaaggacgtacccggggaataccgggttcgattcccagggggaacaacacttgg 5253294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 6606230 - 6606168
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||||    
T  6606230 agctccttccaaggacgtatccggggaataccgggttcgattctcagggggaacaacacttgg 6606168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 13036137 - 13036075
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| |||||||||||||  |||  |||||||||||||||| ||||||||||||||||||||    
T  13036137 agctccttccaaggacgtattcggggaatatcgggttcgattttcagggggaacaacacttgg 13036075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 26476496 - 26476434
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||| ||||||||||||||| ||| |||||||||| ||||| ||||| |||||||| |||||    
T  26476496 agctccttccaaggacgtacctggagaatatcgggtacgattttcaggaggaacaacgcttgg 26476434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 8932644 - 8932700
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| ||| ||||  ||||||||||||||||  |||||||||||||||||||    
T  8932644 ttccaaggatgtatccggggaatatcgggttcgattcccagggggaacaacacttgg 8932700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 8944110 - 8944166
Alignment:
Q  187 ttccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    ||||||||| ||| ||||  ||||||||||||||||  |||||||||||||||||||    
T  8944110 ttccaaggatgtatccggggaatatcgggttcgattcccagggggaacaacacttgg 8944166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 11142546 - 11142621
Alignment:
Q  147 ttttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    ||||||| ||||||| ||||  ||||||  || ||||||||||||||||| ||||||| ||||| || ||||||||    
T  11142546 ttttaacaaagttgtttgggcctcagtgacaagaagctcattccaaggacatacccgggaaataccgagttcgatt 11142621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 21898594 - 21898687
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttgg 243  Q
    |||||||||||  |||| | |||||| ||  ||||| ||||||||||||| ||||  |||| |||||||||||  |||| |||||||| |||||    
T  21898594 taaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggttcgattcccaggaggaacaacgcttgg 21898687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 29333302 - 29333230
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgatt 222  Q
    |||||||||||| |||| |  ||||| ||| ||||| |||||||||||||||| |  |||| |||||||||||    
T  29333302 taaccaagttgtttgggctctagtggcaatgagctccttccaaggacgtacccagggaataccgggttcgatt 29333230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 33859484 - 33859396
Alignment:
Q  149 ttaaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||||||||||  | || || |||||||| || ||| || ||||||||||| | | ||||| ||||||||||| | ||||||||||||    
T  33859484 ttaaccaagttgcttaggctttagtggtaaaaaactcttttcaaggacgtactcaggaaataccgggttcgatttttagggggaacaac 33859396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 34954752 - 34954696
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaac 237  Q
    ||||| ||||||||||||||| ||  |||| | ||||||||| ||||||||||||||    
T  34954752 agctccttccaaggacgtacctggggaataccaggttcgattctcagggggaacaac 34954696  T

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Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 40990 - 41084
Alignment:
Q  151 aaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    ||||||||||| |||| | |||||| ||  ||||| ||||| |||||||| | |  |||||||||||||||| ||| ||||||||||||||||||    
T  40990 aaccaagttgtttgggctccagtggcaaggagctccttccatggacgtactcagggaatatcgggttcgattctcaaggggaacaacacttggtc 41084  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 546 - 607
Alignment:
Q  181 agctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttg 242  Q
    ||||| ||||||||||||||||||  |||| |||||||||||  ||||||||||||||||||    
T  546 agctccttccaaggacgtacccggggaataccgggttcgattcgcagggggaacaacacttg 607  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 412190 - 412095
Alignment:
Q  150 taaccaagttgtatgggtttcagtggtaataagctcattccaaggacgtacccggaaaatatcgggttcgattatcagggggaacaacacttggtc 245  Q
    |||||||||||  |||| ||||||||  || ||||| ||||||||||||| ||||  |||| || ||||||||  ||||||||||||| |||||||    
T  412190 taaccaagttgcttgggcttcagtggcgatgagctccttccaaggacgtatccggggaataccgagttcgattcacagggggaacaacgcttggtc 412095  T

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