View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0383_low_2 (Length: 505)

Name: NF0383_low_2
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0383_low_2
NF0383_low_2
[»] chr7 (18 HSPs)
chr7 (3-134)||(13807031-13807162)
chr7 (201-257)||(19828145-19828201)
chr7 (201-257)||(27704294-27704350)
chr7 (164-257)||(21388542-21388635)
chr7 (201-257)||(12264073-12264129)
chr7 (201-257)||(32074390-32074446)
chr7 (201-257)||(35683122-35683178)
chr7 (200-254)||(15020982-15021036)
chr7 (215-257)||(35815857-35815899)
chr7 (205-239)||(46716367-46716401)
chr7 (212-257)||(16200578-16200623)
chr7 (201-257)||(19752963-19753019)
chr7 (201-249)||(21576886-21576934)
chr7 (201-257)||(24061324-24061380)
chr7 (201-257)||(33996876-33996932)
chr7 (201-257)||(35612562-35612618)
chr7 (213-257)||(47463950-47463994)
chr7 (201-249)||(48674557-48674605)
[»] chr2 (16 HSPs)
chr2 (172-257)||(38179211-38179296)
chr2 (187-257)||(12747757-12747827)
chr2 (201-257)||(3301830-3301886)
chr2 (213-257)||(33262461-33262505)
chr2 (202-257)||(2289629-2289684)
chr2 (178-257)||(38387682-38387761)
chr2 (201-255)||(28692480-28692534)
chr2 (205-239)||(32891633-32891667)
chr2 (212-257)||(5398113-5398158)
chr2 (201-254)||(20641876-20641929)
chr2 (212-257)||(38557229-38557274)
chr2 (201-257)||(4183195-4183251)
chr2 (201-257)||(27913465-27913520)
chr2 (201-257)||(28748579-28748635)
chr2 (201-249)||(38525548-38525596)
chr2 (201-257)||(40864418-40864474)
[»] chr3 (26 HSPs)
chr3 (212-257)||(42920653-42920698)
chr3 (200-257)||(46795923-46795980)
chr3 (187-254)||(46880019-46880086)
chr3 (212-254)||(51467198-51467240)
chr3 (201-257)||(882408-882464)
chr3 (201-257)||(32732532-32732588)
chr3 (201-257)||(37488455-37488511)
chr3 (214-257)||(8756543-8756586)
chr3 (178-257)||(45871036-45871115)
chr3 (212-257)||(15491872-15491917)
chr3 (212-257)||(48739750-48739795)
chr3 (204-257)||(51425859-51425912)
chr3 (200-257)||(52046379-52046436)
chr3 (201-257)||(9220247-9220303)
chr3 (201-257)||(17608314-17608370)
chr3 (201-249)||(17729018-17729066)
chr3 (201-249)||(19030247-19030295)
chr3 (201-257)||(19996447-19996503)
chr3 (203-239)||(23939071-23939107)
chr3 (201-257)||(28193817-28193873)
chr3 (205-257)||(30779566-30779618)
chr3 (201-257)||(36625166-36625222)
chr3 (201-257)||(50659609-50659665)
chr3 (201-257)||(50727239-50727295)
chr3 (201-257)||(50785553-50785609)
chr3 (201-257)||(54626362-54626418)
[»] chr6 (17 HSPs)
chr6 (201-257)||(22574889-22574945)
chr6 (201-255)||(19374835-19374889)
chr6 (212-257)||(24758758-24758803)
chr6 (212-257)||(34432803-34432848)
chr6 (201-257)||(9372196-9372252)
chr6 (201-257)||(10483531-10483587)
chr6 (213-257)||(17265270-17265314)
chr6 (201-257)||(30916340-30916396)
chr6 (201-257)||(31935118-31935174)
chr6 (178-257)||(894604-894683)
chr6 (214-257)||(7581063-7581106)
chr6 (404-449)||(17180864-17180909)
chr6 (201-257)||(2426083-2426139)
chr6 (201-257)||(5052068-5052124)
chr6 (201-257)||(9435645-9435701)
chr6 (201-249)||(10517226-10517274)
chr6 (201-257)||(15963938-15963994)
[»] chr5 (18 HSPs)
chr5 (201-257)||(41477353-41477409)
chr5 (212-257)||(19480694-19480738)
chr5 (212-257)||(25729446-25729491)
chr5 (201-257)||(6735784-6735840)
chr5 (201-257)||(18638617-18638673)
chr5 (204-255)||(9688670-9688721)
chr5 (178-257)||(39919065-39919144)
chr5 (187-257)||(29713357-29713427)
chr5 (212-257)||(2362988-2363033)
chr5 (200-257)||(10404146-10404203)
chr5 (200-249)||(18756013-18756062)
chr5 (201-249)||(12355830-12355878)
chr5 (201-249)||(16280273-16280321)
chr5 (201-257)||(16891365-16891421)
chr5 (201-257)||(21918071-21918127)
chr5 (209-257)||(33736017-33736065)
chr5 (201-249)||(34398484-34398532)
chr5 (201-257)||(41319446-41319502)
[»] chr1 (18 HSPs)
chr1 (178-257)||(3269638-3269717)
chr1 (200-254)||(14396461-14396515)
chr1 (201-257)||(23393667-23393723)
chr1 (201-257)||(47088828-47088884)
chr1 (214-257)||(20030097-20030140)
chr1 (201-239)||(4429505-4429543)
chr1 (227-257)||(32141529-32141559)
chr1 (201-239)||(35283538-35283576)
chr1 (212-257)||(32556935-32556980)
chr1 (212-257)||(48638551-48638596)
chr1 (212-244)||(5315591-5315623)
chr1 (201-257)||(7166222-7166278)
chr1 (201-257)||(8865873-8865929)
chr1 (201-257)||(15390239-15390295)
chr1 (201-257)||(19924450-19924506)
chr1 (201-257)||(27642722-27642777)
chr1 (213-249)||(34656402-34656438)
chr1 (205-257)||(35605622-35605674)
[»] chr8 (14 HSPs)
chr8 (201-257)||(10573120-10573176)
chr8 (212-257)||(5683773-5683818)
chr8 (187-239)||(12676273-12676323)
chr8 (178-257)||(3189923-3190000)
chr8 (201-257)||(36540306-36540362)
chr8 (205-251)||(39674057-39674103)
chr8 (200-257)||(7388474-7388531)
chr8 (212-257)||(16449144-16449189)
chr8 (212-257)||(26192722-26192767)
chr8 (212-257)||(39362284-39362329)
chr8 (212-257)||(44673654-44673699)
chr8 (201-257)||(1286548-1286603)
chr8 (201-257)||(5038577-5038633)
chr8 (201-257)||(43856377-43856433)
[»] chr4 (18 HSPs)
chr4 (201-257)||(31308158-31308214)
chr4 (201-257)||(5305005-5305061)
chr4 (201-257)||(39023194-39023250)
chr4 (200-257)||(17447183-17447240)
chr4 (201-254)||(18002346-18002399)
chr4 (204-257)||(34862859-34862912)
chr4 (200-257)||(44312778-44312835)
chr4 (212-257)||(45673671-45673716)
chr4 (212-257)||(55021573-55021618)
chr4 (201-249)||(7686257-7686305)
chr4 (201-257)||(18360512-18360568)
chr4 (201-257)||(29505730-29505786)
chr4 (201-249)||(34618309-34618357)
chr4 (201-257)||(36132248-36132304)
chr4 (201-257)||(36602361-36602417)
chr4 (213-249)||(42425911-42425947)
chr4 (201-257)||(49757279-49757335)
chr4 (213-257)||(50512379-50512423)
[»] scaffold0460 (1 HSPs)
scaffold0460 (212-257)||(13209-13254)
[»] scaffold0275 (1 HSPs)
scaffold0275 (200-257)||(8840-8896)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 13807162 - 13807031
Alignment:
Q  3 aggagcagcacagagcatgagcatgagtgcaaattaaatgacgacattgaaagtaataaattagtaggatggtgtttggtgagacgccatgggatcaact 102  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13807162 aggagcaacatagagcatgagcatgagtgcaaattaaatgacgacattgaaagtaataaattagtaggatggtgtttggtgagacgccatgggatcagct 13807063  T
Q  103 actctgaccggtggctttcatgcattcactca 134  Q
    ||||||||||||||||||||||||||||||||    
T  13807062 actctgaccggtggctttcatgcattcactca 13807031  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 19828201 - 19828145
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  19828201 tggagtatccagggttcgaaccccgacctctgcatataaaatgcgatatccctacca 19828145  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 27704294 - 27704350
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||| ||||||||||||||| |||||||||| |||| ||||||||||||    
T  27704294 tggagtgtccagagttcgaaccccaacccctgcatataatatgcaatattcctacca 27704350  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 21388635 - 21388542
Alignment:
Q  164 aagtatcttaatgactagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| |||| || ||||| || ||||||||||||| |||||||| | |||||||||||||  |  |||||||||| |||| |||| |||||||    
T  21388635 aagtagcttagtggctagagctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctacca 21388542  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 12264129 - 12264073
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||||||| ||  || ||||||||||||||| |||| |||||||    
T  12264129 tggagtgttcagggttcgaactccggcccctgcatataaaatgcaatatccctacca 12264073  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 32074390 - 32074446
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||| || |||||||||||||| ||||| |||||||    
T  32074390 tggagtgtccggggttcgaaccccagcccctgcatataaaatgtgatatccctacca 32074446  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 35683122 - 35683178
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | | ||||||||||| ||| |||||||||||||||||||| |||||||    
T  35683122 tggagtgtccggagttcgaaccccgacccctgcatataaaatgcgatatccctacca 35683178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 15021036 - 15020982
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    ||||||||| | |||||||||||||||||  ||||||||| |||| |||||||||    
T  15021036 atggagtgtccggggttcgaaccccaacccttgcatataacatgcaatattccta 15020982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 35815899 - 35815857
Alignment:
Q  215 ttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||| |||||||||||||||||||| |||||||    
T  35815899 ttcgaaccccgacccctgcatataaaatgcgatatccctacca 35815857  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 46716401 - 46716367
Alignment:
Q  205 gtgttcagggttcgaaccccaacctctgcatataa 239  Q
    |||||||||||||||||||| ||||||||||||||    
T  46716401 gtgttcagggttcgaaccccgacctctgcatataa 46716367  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 16200623 - 16200578
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  16200623 gggttcgaaccccgacccctgcatataatatgcaatattcctacca 16200578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 19752963 - 19753019
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||  || |||||||||| |||| |||| |||||||    
T  19752963 tggagtgtccagggttcgaaccccggcccctgcatataatatgcaatatccctacca 19753019  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 21576934 - 21576886
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||| ||| ||||||||||||||| |||||||||||| |||| ||||    
T  21576934 tggagtattcggggttcgaaccccaatctctgcatataatatgcaatat 21576886  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 24061324 - 24061380
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| |||||||||||||  |  |||||||||| |||| ||||||||||||    
T  24061324 tggagtgttcggggttcgaaccccggctcctgcatataatatgcaatattcctacca 24061380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 33996876 - 33996932
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||||||| ||  |||||||||| |||| |||| |||||||    
T  33996876 tggagtgtccagggttcgaaccccgactcctgcatataatatgcaatatccctacca 33996932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 35612562 - 35612618
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||| ||||||||||||||||||||| |||| || | |||||||    
T  35612562 tggagtgtccggggttcaaaccccaacctctgcatataatatgcaatctccctacca 35612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 47463994 - 47463950
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||||| |||||||||| |||| ||||| ||||||    
T  47463994 ggttcgaaccccaacccctgcatataacatgcaatatttctacca 47463950  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 48674557 - 48674605
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| | ||||| ||||||||||| ||||||||||||||| ||||    
T  48674557 tggagtgtccggggtttgaaccccaacccctgcatataaaatgcaatat 48674605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 38179211 - 38179296
Alignment:
Q  172 taatgactagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||| || ||||||||||||| |||||||| |  ||||||||||||| || ||||||||||||||| |||| |||||||    
T  38179211 taatgactagagctcacacaatttaattgtggagtgtccgaggttcgaaccccagcccctgcatataaaatgcaatatccctacca 38179296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 12747827 - 12747757
Alignment:
Q  187 acacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||  |||||||| | |||||||||||||||| |||| |||||| |||| ||||| ||||||    
T  12747827 acacaatttaatcgtggagtgtccggggttcgaaccccaacttctgtatataatatgcaatatttctacca 12747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 3301886 - 3301830
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||||| ||| ||| ||||||||||| |||| |||||||    
T  3301886 tggagtgttcggggttcgaaccccgacccctgtatataaaatgcaatatccctacca 3301830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 33262505 - 33262461
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||    
T  33262505 ggttcgaaccccgacccctgcatataaaatgcgatatccctacca 33262461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 2289684 - 2289629
Alignment:
Q  202 ggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||| ||||||||||||||  ||| |||||||||| |||| ||||||||||||    
T  2289684 ggagtgtccagggttcgaaccctgacccctgcatataatatgcaatattcctacca 2289629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 38387761 - 38387682
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| || |||||||| |||| ||||||||   |||||||||||||| || |||||||||| |||| |||| |||||||    
T  38387761 ctagagctcacacaattaaattgtggagtgtctggggttcgaaccccagcccctgcatataatatgcaatatccctacca 38387682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 28692480 - 28692534
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctac 255  Q
    |||||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||    
T  28692480 tggagtgtcctgggttcgaaccccgacccctgcatataaaatgcaatatccctac 28692534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 32891667 - 32891633
Alignment:
Q  205 gtgttcagggttcgaaccccaacctctgcatataa 239  Q
    |||||||||||||||||||||||| ||||||||||    
T  32891667 gtgttcagggttcgaaccccaacccctgcatataa 32891633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 5398113 - 5398158
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||| |||||||||||||||||  |||| |||||||    
T  5398113 gggttcgaaccccagcctctgcatataaaatgtaatatccctacca 5398158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 20641929 - 20641876
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    |||||||| | ||||||||||| ||||| || ||||||||||||||||| ||||    
T  20641929 tggagtgtccggggttcgaacctcaacccctacatataaaatgcgatatcccta 20641876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 38557229 - 38557274
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  38557229 gggttcgaaccccgacccctgcatataaaatgccatatccctacca 38557274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 4183251 - 4183195
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||||| ||  |||||||||| |||| |||| |||||||    
T  4183251 tggagtgttcggggttcgaaccccgactcctgcatataatatgcaatatccctacca 4183195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 27913465 - 27913520
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||  |||||||||||||||||| |||||||||| |||| |||| |||||||    
T  27913465 tggagtgtctagggttcgaaccccaacc-ctgcatataatatgcaatatccctacca 27913520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 28748579 - 28748635
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||| ||| ||||||||||||| || |||| ||||||||||  ||||||||||||    
T  28748579 tggagtattcggggttcgaaccccgacttctgtatataaaatgtaatattcctacca 28748635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 38525548 - 38525596
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||| ||||    
T  38525548 tggagtgttccgggttcgaaccctgacccctgcatataaaatgcaatat 38525596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 40864474 - 40864418
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | | |||||||||||  || ||||||||||||||| ||||||||||||    
T  40864474 tggagtgtccggtgttcgaaccccggcccctgcatataaaatgcaatattcctacca 40864418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 42920653 - 42920698
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  42920653 gggttcgaaccccaacccctgcatataaaatgcgatattcctacca 42920698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 46795923 - 46795980
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||||||||||||||  || ||||||||||||||| |||| |||||||    
T  46795923 atggagtgttcagggttcgaaccccggcccctgcatataaaatgcaatatccctacca 46795980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 46880086 - 46880019
Alignment:
Q  187 acacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    ||||||||||| | |||||||||| ||||||||||| |  |||||||||||||||||| |||| ||||    
T  46880086 acacaatttaactgtggagtgttcggggttcgaacctcggcctctgcatataaaatgcaatatcccta 46880019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 51467240 - 51467198
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  51467240 gggttcgaaccccaacccctgcatataaaatgcgatatcccta 51467198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 882464 - 882408
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||||||||||| |  |||||||||| |||| |||| |||||||    
T  882464 tggagtgttcagggttcgaaccccagctcctgcatataatatgcaatatccctacca 882408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 32732532 - 32732588
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | | ||||||||||| ||| |||||||||||||||||||| |||||||    
T  32732532 tggagtgtccggagttcgaaccccgacccctgcatataaaatgcgatatccctacca 32732588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 37488455 - 37488511
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || |||||||||||||||||||| |||||||    
T  37488455 tggagtgtccggggttcgaaccccggcccctgcatataaaatgcgatatccctacca 37488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 8756586 - 8756543
Alignment:
Q  214 gttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||    
T  8756586 gttcgaaccccgacccctgcatataaaatgcaatattcctacca 8756543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 45871115 - 45871036
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||| |||| | |||||| | ||||||||||||| ||| |||||||||| || | |||| |||||||    
T  45871115 ctagaactcacacaattaaattgtagagtgtccggggttcgaaccccgacccctgcatataatatacaatatccctacca 45871036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 15491917 - 15491872
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  15491917 gggttcgaaccccaacccctgcatataatatgcaatatttctacca 15491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 48739750 - 48739795
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||| || ||||||||||||||| |||| |||||||    
T  48739750 gggttcgaaccccagcccctgcatataaaatgcaatatccctacca 48739795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 51425912 - 51425859
Alignment:
Q  204 agtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| |||||||||||||||  || |||||||||||||| ||||| |||||||    
T  51425912 agtgtccagggttcgaaccccggcccctgcatataaaatgtgatatccctacca 51425859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 52046379 - 52046436
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||| ||||||||||||||| |||  || ||||||||||| |||| |||||||    
T  52046379 atggagtgtccagggttcgaaccccgaccattgtatataaaatgcaatatccctacca 52046436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 9220247 - 9220303
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||  ||||||||||||| |||||| |||||||    
T  9220247 tggagtgtccggggttcgaaccccgactcctgcatataaaatacgatatccctacca 9220303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 17608314 - 17608370
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||  || |||||||||| |||| |||| |||||||    
T  17608314 tggagtgtccagggttcgaaccccggcccctgcatataatatgcaatatccctacca 17608370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 17729066 - 17729018
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| ||||    
T  17729066 tggagtgtccagggttcgaaccccgacccctgcatataatatgcaatat 17729018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 19030295 - 19030247
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| ||||    
T  19030295 tggagtgtccagggttcgaaccccgacccctgcatataatatgcaatat 19030247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 19996447 - 19996503
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||||||  |||||||||| |||| |||| |||||||    
T  19996447 tggagtgtccggggttcgaaccccaactcctgcatataatatgcaatatccctacca 19996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 23939107 - 23939071
Alignment:
Q  203 gagtgttcagggttcgaaccccaacctctgcatataa 239  Q
    |||||| | ||||||||||||||||||||||||||||    
T  23939107 gagtgtccggggttcgaaccccaacctctgcatataa 23939071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 28193873 - 28193817
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||| ||||| ||| ||||||||||||||| |||| |||||||    
T  28193873 tggagtgtccggggttcgtaccccgacccctgcatataaaatgcaatatccctacca 28193817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 30779566 - 30779618
Alignment:
Q  205 gtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||| ||||||||||||||| ||| |||||||||| |||| |||| |||||||    
T  30779566 gtgtccagggttcgaaccccgacccctgcatataatatgcaatatccctacca 30779618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 36625166 - 36625222
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| | ||||||||||||||  |||||||||| |||| |||| |||||||    
T  36625166 tggagtgttcggagttcgaaccccaactcctgcatataatatgcaatatccctacca 36625222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 50659665 - 50659609
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || |||||||||||||| ||||| |||||||    
T  50659665 tggagtgtccggggttcgaaccccggcccctgcatataaaatgtgatatccctacca 50659609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 50727239 - 50727295
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||| |||  || || ||||||||||||||||| |||||||    
T  50727239 tggagtgttcggggttcgaatcccggccccttcatataaaatgcgatatccctacca 50727295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 50785609 - 50785553
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||| |||  || || ||||||||||||||||| |||||||    
T  50785609 tggagtgttcggggttcgaatcccggccccttcatataaaatgcgatatccctacca 50785553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 54626418 - 54626362
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||  || ||||||||||||||||| |||||||    
T  54626418 tggagtgtccggggttcgaaccccgactcctacatataaaatgcgatatccctacca 54626362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 22574945 - 22574889
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||    
T  22574945 tggagtgtgcggggttcgaaccccaacccctgcatataaaatgcgatatccctacca 22574889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 19374835 - 19374889
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctac 255  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||    
T  19374835 tggagtgttcggggttcgaaccccaacccctgcatataatatgcaatattcctac 19374889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 24758803 - 24758758
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  24758803 gggttcgaaccccgacccctgcatataaaatgcgatatccctacca 24758758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 34432803 - 34432848
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||    
T  34432803 gggttcgaaccccaacctctgcatataatatgcaatatccctacca 34432848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 9372196 - 9372252
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| |||| |||||||    
T  9372196 tggagtgtccagggttcgaaccccgacccctgcatataatatgcaatatccctacca 9372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 10483531 - 10483587
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  10483531 tggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatatccctacca 10483587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 17265314 - 17265270
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||    
T  17265314 ggttcgaaccccaacctctgcatataacatgtcatattcctacca 17265270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 30916396 - 30916340
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||||||||||| | |||||||| |||| |||| |||||||    
T  30916396 tggagtgtccagggttcgaaccccaacccccgcatataacatgcaatatccctacca 30916340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 31935174 - 31935118
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  31935174 tggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatatccctacca 31935118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 894604 - 894683
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| || |||||||| |||| |||||||| | ||||||||||| | ||| |||||||||| |||| |||| |||||||    
T  894604 ctagagctcacacaattaaattgtggagtgtccggggttcgaacctcgacccctgcatataatatgcaatatccctacca 894683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 7581106 - 7581063
Alignment:
Q  214 gttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||    
T  7581106 gttcgaaccccaacccctgcatataaaatgcaatatccctacca 7581063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 17180864 - 17180909
Alignment:
Q  404 ttaacctcaaatagataacaacaaaaatgaatcggattgagttgtt 449  Q
    |||||||||||||||||||||||||||| ||| | |||| ||||||    
T  17180864 ttaacctcaaatagataacaacaaaaataaattgaattgcgttgtt 17180909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 2426139 - 2426083
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||||||  ||||||||| |||  ||||||||||||    
T  2426139 tggagtgtccggggttcgaaccccaacccttgcatataatatgtaatattcctacca 2426083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 5052068 - 5052124
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||| |||||| ||  |||||||||||||||||||| |||||||    
T  5052068 tggagtgtccggggttcaaaccccgactcctgcatataaaatgcgatatccctacca 5052124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 9435701 - 9435645
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||| || |||||||||| |||| |||| |||||||    
T  9435701 tggagtgtccggggttcgaaccccagcccctgcatataatatgcaatatccctacca 9435645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 10517274 - 10517226
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| | ||||||||||||| ||| ||||||||||||||| ||||    
T  10517274 tggagtgtccggggttcgaaccccgacccctgcatataaaatgcaatat 10517226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 15963938 - 15963994
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||| || ||||||| || |||| |||| |||||||    
T  15963938 tggagtgtccagggttcgaaccccagcccctgcataaaatatgcaatatccctacca 15963994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 41477353 - 41477409
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||| |||||||    
T  41477353 tggagtgttcggggttcgaaccccagcccctgcatataaaatgcgatatccctacca 41477409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 19480694 - 19480738
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  19480694 gggttcgaaccccaacc-ctacatataaaatgcgatattcctacca 19480738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 25729446 - 25729491
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  25729446 gggttcgaaccccgacccctgcatataaaatgcgatatccctacca 25729491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 6735784 - 6735840
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||  |||| |||||||    
T  6735784 tggagtgttcggggttcgaaccccgacccctgcatataaaatgaaatatccctacca 6735840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 18638673 - 18638617
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || |||||||||||||||||||| |||||||    
T  18638673 tggagtgtccggggttcgaaccccggcccctgcatataaaatgcgatatccctacca 18638617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 9688670 - 9688721
Alignment:
Q  204 agtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctac 255  Q
    ||||||| ||||||||||||| |||||||||||||| |||| ||||| ||||    
T  9688670 agtgttcggggttcgaaccccgacctctgcatataatatgcaatatttctac 9688721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 39919065 - 39919144
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| || ||||||||||||| |||||||| | |||||||||||||  |  |||||||||| |||| |||| |||||||    
T  39919065 ctagagctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaatatccctacca 39919144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 29713357 - 29713427
Alignment:
Q  187 acacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| |||||||||  |||||||||  || |||||||||||||| | || |||| |||||||    
T  29713357 acacaatttaattgtggagtgtttggggttcgaattccgacctctgcatataataggcaatatccctacca 29713427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 2363033 - 2362988
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||    
T  2363033 gggttcgaaccccaacccctgcatataatatgcaatatccctacca 2362988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 10404203 - 10404146
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||| | ||||||||||||| ||  |||||||||| |||| ||||||||||||    
T  10404203 atggagtgtccggggttcgaaccccgactcctgcatataatatgcaatattcctacca 10404146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 18756062 - 18756013
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    ||||||||| | ||||||||||||| ||  ||||||||||||||||||||    
T  18756062 atggagtgtccggggttcgaaccccgactcctgcatataaaatgcgatat 18756013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 12355878 - 12355830
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||||| |||||||||| || ||| ||||||||||||||| ||||    
T  12355878 tggagtgttcggggttcgaactccgacccctgcatataaaatgcaatat 12355830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 16280321 - 16280273
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| | ||||||||||||||||| || |||||||||||| ||||    
T  16280321 tggagtgtccggggttcgaaccccaacccctacatataaaatgcaatat 16280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 16891421 - 16891365
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| || |||||||| ||||| ||| ||||||||||| |||| |||||||    
T  16891421 tggagtgttcgggattcgaacctcaacccctgtatataaaatgcaatatccctacca 16891365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 21918127 - 21918071
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||| |  |||||||||| |||| |||| |||||||    
T  21918127 tggagtgtccagggttcgaaccccagctcctgcatataatatgcaatatccctacca 21918071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 33736017 - 33736065
Alignment:
Q  209 tcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||||| ||| |||||||||| |||| |||| |||||||    
T  33736017 tcagggttcgaaccccgacccctgcatataatatgcaatatccctacca 33736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 34398532 - 34398484
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| | ||||||||||||| ||  ||||||||||||||||||||    
T  34398532 tggagtgtccggggttcgaaccccgactcctgcatataaaatgcgatat 34398484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 41319446 - 41319502
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||| || ||| ||||||||||||||| |||| |||||||    
T  41319446 tggagtgtccggggttcgaactccgacccctgcatataaaatgcaatatccctacca 41319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 3269717 - 3269638
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||| |||| |||| ||| |||||||||||||||| || |||||||||| |||| |||| |||||||    
T  3269717 ctagaactcacacaattaaattgtggactgtccagggttcgaaccccagcccctgcatataatatgcaatatccctacca 3269638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 14396515 - 14396461
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||| ||||| ||||    
T  14396515 atggagtgttcggggttcgaaccccgacccctgcatataaaatgtgatatcccta 14396461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 23393723 - 23393667
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||| | ||| |||||||||||||| ||||| |||||||    
T  23393723 tggagtgttcggggttcgaacctcgacccctgcatataaaatgtgatatccctacca 23393667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 47088884 - 47088828
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||| || ||||||||||||| |||||| |||||||    
T  47088884 tggagtgtccggggttcgaaccccagcccctgcatataaaatacgatatccctacca 47088828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 20030140 - 20030097
Alignment:
Q  214 gttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||    
T  20030140 gttcgaaccccgacccctgcatataaaatgcaatattcctacca 20030097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 4429505 - 4429543
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataa 239  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  4429505 tggaatgttcagggttcgaaccccaacccctgcatataa 4429543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 32141529 - 32141559
Alignment:
Q  227 cctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||||||||||||||||||||    
T  32141529 cctctgcatataaaatgcgatattcctacca 32141559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 35283576 - 35283538
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataa 239  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  35283576 tggagtgttcagggttcgaaccccggcctctgcatataa 35283538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 32556935 - 32556980
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| |||||||||||||||||||||| |||| |||| |||||||    
T  32556935 gggtttgaaccccaacctctgcatataatatgcaatatccctacca 32556980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 48638596 - 48638551
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||||||| || ||||||||||||||| |||| |||||||    
T  48638596 gggttcgaaccccagcccctgcatataaaatgcaatatccctacca 48638551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 5315623 - 5315591
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgc 244  Q
    |||||||||||||||||||||||||||| ||||    
T  5315623 gggttcgaaccccaacctctgcatataatatgc 5315591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 7166222 - 7166278
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||| || |||||||||| |||| |||| |||||||    
T  7166222 tggagtgtccggggttcgaaccccagcccctgcatataatatgcaatatccctacca 7166278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 8865929 - 8865873
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||| ||| ||| |||||||||| |||| |||| |||||||    
T  8865929 tggagtgtccagggttcgaatcccgacccctgcatataatatgcaatatccctacca 8865873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 15390295 - 15390239
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||| ||||||| |||||| ||| |||| |||| |||||||    
T  15390295 tggagtgtccagggttcgaatcccaacccctgcatctaatatgcaatatccctacca 15390239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 19924506 - 19924450
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||   ||||||||||||||||||| |||||||    
T  19924506 tggagtgtccggggttcgaaccccgactcttgcatataaaatgcgatatccctacca 19924450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 27642722 - 27642777
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||| ||| || ||||||||||||||| |||| |||||||    
T  27642722 tggagtgtccagggttcgaactccagcc-ctgcatataaaatgcaatatccctacca 27642777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 34656402 - 34656438
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  34656402 ggttcgaaccccaacccctgcatataaaatgcaatat 34656438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 35605622 - 35605674
Alignment:
Q  205 gtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| |||||||||||||| ||| |||||||||| |||| |||| |||||||    
T  35605622 gtgtttagggttcgaaccccgacccctgcatataatatgcaatatccctacca 35605674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 10573176 - 10573120
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| |||| |||||||    
T  10573176 tggagtgttcggggttcgaaccccaacccctgcatataatatgcaatatccctacca 10573120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 5683818 - 5683773
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  5683818 gggttcgaaccccaacccctgcatataatatgcaatattcctacca 5683773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 12676323 - 12676273
Alignment:
Q  187 acacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataa 239  Q
    ||||||||||||| |||  ||||| ||||||||||||||||||||||||||||    
T  12676323 acacaatttaattgtgg--tgttcggggttcgaaccccaacctctgcatataa 12676273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 3189923 - 3190000
Alignment:
Q  178 ctagaacttacacaatttaattatggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| || ||||||||||||| |||||||| | ||||||||||||| ||  |||||||||| |||| |||| |||||||    
T  3189923 ctagagctcacacaatttaattgtggagtgtccggggttcgaaccccgac--ctgcatataatatgcaatatccctacca 3190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 36540362 - 36540306
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||  ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  36540362 tggagtgtttggggttcgaaccccgacccctgcatataaaatgcaatatccctacca 36540306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 39674057 - 39674103
Alignment:
Q  205 gtgttcagggttcgaaccccaacctctgcatataaaatgcgatattc 251  Q
    |||| ||||||||||||||||||| |||||||||| ||| |||||||    
T  39674057 gtgtccagggttcgaaccccaacccctgcatataacatgtgatattc 39674103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 7388531 - 7388474
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||| | ||| ||||||||||| |||||||||| |||| |||| |||||||    
T  7388531 atggagtgttcggagtttgaaccccaacccctgcatataatatgcaatatccctacca 7388474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 16449189 - 16449144
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||    
T  16449189 gggttcgaaccccaacccctgcatataatatgcaatatccctacca 16449144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 26192722 - 26192767
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||||    
T  26192722 gggttcgaaccccgacctctgcatataatatgcaatatccctacca 26192767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 39362329 - 39362284
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||||||||||||||| |||| |||| |||||||    
T  39362329 gggttcgaactccaacctctgcatataatatgcaatatccctacca 39362284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 44673654 - 44673699
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||    
T  44673654 gggttcgaaccccgacccctgcatataaaatgtgatatccctacca 44673699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 1286548 - 1286603
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| || |||||||||||| |||||||||||| |||| |||| |||||||    
T  1286548 tggagtgttcgggattcgaaccccaa-ctctgcatataatatgcaatatccctacca 1286603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 5038633 - 5038577
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||| |  |||||||||| |||| |||| |||||||    
T  5038633 tggagtgtccagggttcgaaccccagctcctgcatataatatgcaatatccctacca 5038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 43856377 - 43856433
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || ||||||||||||||| |||| |||||||    
T  43856377 tggagtgtccggggttcgaaccccggcccctgcatataaaatgcaatatccctacca 43856433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 31308158 - 31308214
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||| ||||| |||||||||||| |||  ||||||||||||||||||||||||||||    
T  31308158 tggaatgttcggggttcgaaccctaactcctgcatataaaatgcgatattcctacca 31308214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 5305005 - 5305061
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||| |  || ||||||||||||||||||||||||||||    
T  5305005 tggagtgtccggggttcgaacctcggcccctgcatataaaatgcgatattcctacca 5305061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 39023250 - 39023194
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| |||| |||||||    
T  39023250 tggagtgtccagggttcgaaccccgacccctgcatataatatgcaatatccctacca 39023194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 17447183 - 17447240
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||| ||| ||||||||||||||  ||||||||||| || ||||| |||||||    
T  17447183 atggagtgtccagagttcgaaccccaactcctgcatataaagtgtgatatccctacca 17447240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 18002399 - 18002346
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattccta 254  Q
    |||||||| | ||||||||||| ||||| || ||||||||||||||||| ||||    
T  18002399 tggagtgtccggggttcgaacctcaacccctacatataaaatgcgatatcccta 18002346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 34862912 - 34862859
Alignment:
Q  204 agtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||| |||||||| || ||||||||||||||||| | |||| |||||||    
T  34862912 agtgttcagagttcgaactccgacctctgcatataaaatacaatatccctacca 34862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 44312778 - 44312835
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||  ||||||||| ||| ||| ||||||||||||||| |||| |||||||    
T  44312778 atggagtgtttggggttcgaatcccgacccctgcatataaaatgcaatatccctacca 44312835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 45673716 - 45673671
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||| | |||||||||| |||| ||||||||||||    
T  45673716 gggttcgaaccccaatccctgcatataatatgcaatattcctacca 45673671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 55021618 - 55021573
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  55021618 gggttcgaaccccgacccctgcatataatatgcaatattcctacca 55021573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 7686257 - 7686305
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| |||||||||||||||  || ||||||||||||||| ||||    
T  7686257 tggagtgtccagggttcgaaccccggcccctgcatataaaatgcaatat 7686305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 18360568 - 18360512
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || |||||||||||||| ||||| |||||||    
T  18360568 tggagtgtccggggttcgaaccccggcccctgcatataaaatgtgatatccctacca 18360512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 29505730 - 29505786
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | || ||||||||||  ||||||||||||||||| ||||| |||||||    
T  29505730 tggagtgtccgggattcgaaccccggcctctgcatataaaatgtgatatccctacca 29505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 34618357 - 34618309
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    |||||||| | |||||| |||||||||| ||||||||||||||| ||||    
T  34618357 tggagtgtccggggttccaaccccaacccctgcatataaaatgcaatat 34618309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 36132304 - 36132248
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | ||||||||||||| ||  |||||||||| |||| ||||||||||||    
T  36132304 tggagtgtccggggttcgaaccccgactcctgcatataatatgcaatattcctacca 36132248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 36602361 - 36602417
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| | |||||||||||||  || |||||||||||||| ||||| |||||||    
T  36602361 tggagtgtccggggttcgaaccccggcccctgcatataaaatgtgatatccctacca 36602417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 42425947 - 42425911
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatat 249  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42425947 ggttcgaaccccaacctctgcatataatatgcaatat 42425911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 49757279 - 49757335
Alignment:
Q  201 tggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||| |||||||||||||||  |  |||||||||| |||| ||||||||||||    
T  49757279 tggagtgtccagggttcgaaccccggctcctgcatataatatgcaatattcctacca 49757335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 50512423 - 50512379
Alignment:
Q  213 ggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    |||||||||| ||||| |||||||||| |||| ||||||||||||    
T  50512423 ggttcgaacctcaacccctgcatataatatgcaatattcctacca 50512379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 13209 - 13254
Alignment:
Q  212 gggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||    
T  13209 gggttcgaaccccaacccctgcatataatatgcaatatccctacca 13254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 8896 - 8840
Alignment:
Q  200 atggagtgttcagggttcgaaccccaacctctgcatataaaatgcgatattcctacca 257  Q
    ||||| ||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  8896 atggattgttcggggttcgaaccccgacc-ctgcatataaaatgcaatatccctacca 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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