View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0383_low_3 (Length: 474)
Name: NF0383_low_3
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0383_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 38569234 - 38569049
Alignment:
| Q |
94 |
gcatcaaattaccacaatttcgaagatcaataaatttaattgatctctcttgt--attctagttgatattttgattgatgcttt-----atatgttgatt |
186 |
Q |
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| T |
38569234 |
gcatcaaattaccacgatttcgaagatcaataaattagcttgatctctcttgtttattctagttgatattttgattgatgcttttatttatatgttgatt |
38569135 |
T |
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| Q |
187 |
attatctgaagataattttatacttcaactacaaaaatactataaca-acatgggcagggaaattcattgttgcacactttcaccc |
271 |
Q |
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| T |
38569134 |
attatttggagataattttatacttcaactacaaaaatactataacatacatgggcagggaaattcattgttgcacactttcaccc |
38569049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 38568948 - 38568813
Alignment:
| Q |
329 |
gacagaatattgggctttttcttacgagaagaagaagattgggggatataccaataaatttcaacctatcaatttcttatttctttcannnnnnnnnnng |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38568948 |
gacagaatattgggctttttcttacgagaagaagaagattggg--atataccaataaatttcaacctatcaatttcttatttctttca-ttttttttttg |
38568852 |
T |
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| Q |
429 |
gtcagtcttatttctttcattttattgtgctctgtgctg |
467 |
Q |
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| T |
38568851 |
gtcagtcttatttctttcattttattgtgctctttgctg |
38568813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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