View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0383_low_5 (Length: 396)
Name: NF0383_low_5
Description: NF0383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0383_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 17124313 - 17124473
Alignment:
| Q |
29 |
agctcaatgatccagacaaaaacaaattctcatagataatgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatg |
128 |
Q |
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| T |
17124313 |
agctcaatgattcagacaaaaacaaattctcatagataatgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatg |
17124412 |
T |
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| Q |
129 |
tgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaagtaataaatga |
189 |
Q |
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| T |
17124413 |
tgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaagtaataaatga |
17124473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 17124571 - 17124664
Alignment:
| Q |
293 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
386 |
Q |
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| T |
17124571 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg |
17124664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 42990257 - 42990152
Alignment:
| Q |
80 |
cagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaag |
179 |
Q |
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| T |
42990257 |
cagatgtggccagatcttatacagaaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctggcaaag |
42990158 |
T |
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| Q |
180 |
taataa |
185 |
Q |
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|||||| |
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| T |
42990157 |
taataa |
42990152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 5229489 - 5229605
Alignment:
| Q |
67 |
atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct |
166 |
Q |
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|||||| || ||||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||| |
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| T |
5229489 |
atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct |
5229588 |
T |
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| Q |
167 |
tctcaaggaaaagtaat |
183 |
Q |
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| T |
5229589 |
tctcctggaaatgtaat |
5229605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 5229724 - 5229815
Alignment:
| Q |
293 |
cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
384 |
Q |
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| T |
5229724 |
cagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtcccta |
5229815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 52550633 - 52550543
Alignment:
| Q |
294 |
agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta |
384 |
Q |
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| T |
52550633 |
agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgggctttatgttcatcttcgcattggtcccta |
52550543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 5450729 - 5450816
Alignment:
| Q |
81 |
agatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttc |
168 |
Q |
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| T |
5450729 |
agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttc |
5450816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 8142484 - 8142421
Alignment:
| Q |
107 |
gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc |
170 |
Q |
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|||||||| |||||| | ||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
8142484 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc |
8142421 |
T |
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