View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0384-INSERTION-1 (Length: 678)
Name: NF0384-INSERTION-1
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384-INSERTION-1 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 29474907 - 29474229
Alignment:
| Q |
1 |
gataactcaataatggcagtcagagccacatcctaaatttgtgagctccagcggtcattaatggattgaagggcatggagaaagctcaaattatcgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29474907 |
gataactcaataatggcagtcagagccacatcctaaatgtgtgagctccagcagtcattaatggattgaagggcatggagaaagctcaaattatcgaaag |
29474808 |
T |
|
| Q |
101 |
catgattgaagccacaacaaatccaataccacaatttaatggcaaagttaagttatccattgcagttacaaagtcaaggatgaagcatttcagggtagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29474807 |
catgattgaagccacaacaaatccaataccacaatttaatggcaaagttaagttatccattgcagttacaaagtcaaggatgaagcatttcagggtagaa |
29474708 |
T |
|
| Q |
201 |
gagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaatacaattgtaaggctgccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29474707 |
gagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaatacaattataaggctgccaa |
29474608 |
T |
|
| Q |
301 |
atgtagaagttgcattacagttgatgataaaagcatattaacatgttcttt-nnnnnnnnnnngcatactaacatgcatgcatatgtacaaaattacaaa |
399 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29474607 |
atgtaaaagttgcattacagttgatgataaaagcatattaacatgttctttcaaaaaaaaaaagcatactaacatgcatgcatatgtacaaaattacaaa |
29474508 |
T |
|
| Q |
400 |
gatactaaaagtttcagcactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattacaaaccaagat |
499 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29474507 |
gatactaaaagtttcaacactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatactagcaattacaaaccaagac |
29474408 |
T |
|
| Q |
500 |
atacaccaaagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29474407 |
atacaccaaagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtg |
29474308 |
T |
|
| Q |
600 |
cctttctttcgccgtaggctatcctttcatggtcctactgagaataaatcccctcaagtgagattttacacgagaggga |
678 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29474307 |
cctttctttcgccgtaggctatcttttcatggttctactgagaataaatcccctcaagtgagattttatacgagaggga |
29474229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 457 - 604
Target Start/End: Complemental strand, 29473661 - 29473514
Alignment:
| Q |
457 |
ttgcattacttatagcaagatcctagcaattacaaaccaagatatacaccaaagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttca |
556 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29473661 |
ttgcattacttatagcaagatactagcaattacaaaccaagacatacaccaaagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttca |
29473562 |
T |
|
| Q |
557 |
atattatattttggcttggagatctttgtttcactttcgtgtgccttt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29473561 |
atattatattttggcttggagatctttgtttcactttggtgtgccttt |
29473514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 29454973 - 29454837
Alignment:
| Q |
1 |
gataactcaataatggcagtcagagccacatcctaaatttgtgagctccagcggtcattaatggattgaagggcatggagaaagctcaaattatcgaaag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
29454973 |
gataactcaataataaaagtcagagccacatccttaatttgtgagctccaacagtcattaataggttgatgggcatggagaaagctcaaattatcaaaag |
29454874 |
T |
|
| Q |
101 |
catgattgaagccacaacaaatccaataccacaattt |
137 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |
|
|
| T |
29454873 |
catgattgaaaccacggcaaatccaataccacaattt |
29454837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 599 - 678
Target Start/End: Complemental strand, 29469194 - 29469115
Alignment:
| Q |
599 |
gcctttctttcgccgtaggctatcctttcatggtcctactgagaataaatcccctcaagtgagattttacacgagaggga |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29469194 |
gcctttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttatacgagaggga |
29469115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 29444848 - 29444668
Alignment:
| Q |
87 |
caaattatcgaaagcatgattgaagccacaacaaatccaataccacaatttaatggcaaagttaagttatccattgcagttacaaagtcaaggatgaagc |
186 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
29444848 |
caaattatcaaaagcatgattgaaaccacgacaaatccaataccacaatttgatgacaaagttaagttatccatggcagttacaaagtcagtgatgaagc |
29444749 |
T |
|
| Q |
187 |
atttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa |
273 |
Q |
| |
|
| | | | ||| || | | |||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
29444748 |
a---aaagcaaatagattttcatg---ggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa |
29444668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 411 - 678
Target Start/End: Original strand, 29422045 - 29422292
Alignment:
| Q |
411 |
tttcagcactttcttacacctaaacaaacatataggccgtttttgtttgcattacttata--gcaagatcctagcaattacaaaccaagatatacaccaa |
508 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||||||| | ||||| |||||| |||| ||| |
|
|
| T |
29422045 |
tttcaacactttcttacacctaaacagacatatatgccatttttctttgcattacttatatagcatgatcctagtatttacagaccaagtgatacttcaa |
29422144 |
T |
|
| Q |
509 |
agtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtgcctttcttt |
608 |
Q |
| |
|
| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
29422145 |
a-----------agaaagaagttatgtacattatgtatctaatcttcaatattatattttggct--gagatctttgtttcacttctgcaggcctttcttt |
29422231 |
T |
|
| Q |
609 |
cgccgtaggctatcctttcatggtcctactgagaataaatcccctcaagtgagattttacacgagaggga |
678 |
Q |
| |
|
| | |||||| | | ||| ||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
29422232 |
cactgtaggcaa-------acggttctactgagaatgaatcccctc--gtgagattttacatgagaggga |
29422292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 29454793 - 29454659
Alignment:
| Q |
188 |
tttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaataca--- |
284 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29454793 |
tttcagggttgaagagaatgaagatgggtcacacaaatagt---caagtaggttacccgccaatagttttttcacaagcaaacaaagcaaaaatacagtt |
29454697 |
T |
|
| Q |
285 |
attgtaaggctgccaaatgtagaagttgcattacagtt |
322 |
Q |
| |
|
|||||| | ||| |||||| |||||||||||||||| |
|
|
| T |
29454696 |
cttgtaatgttgcggaatgtaaaagttgcattacagtt |
29454659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 29421791 - 29421955
Alignment:
| Q |
122 |
tccaataccacaatttaatggcaaagttaagttatccattgcagttacaaagtcaaggatgaagca-------------tttcagggtagaagagattga |
208 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |||| ||| |||||| |||||| || ||||| ||| ||||||||||| |
|
|
| T |
29421791 |
tccaataccacaatttgatgacaaagttaagttatccatgacagtgacagagtcaacgatgaaacaaaagcaaatagattttcatggttgaagagattga |
29421890 |
T |
|
| Q |
209 |
agacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa |
273 |
Q |
| |
|
||| || ||| ||||||| | ||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
29421891 |
agatgggccacgcaattagcattcaagtaggttacttgccaatagttttctcacaagcaaacaaa |
29421955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 29444570 - 29444485
Alignment:
| Q |
424 |
ttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattacaaaccaagatatacaccaaa |
509 |
Q |
| |
|
||||||||||||| ||||||| || ||||| |||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
29444570 |
ttacacctaaacagacatatatgcaatttttctttgaattacttatagcaggatcctagcaattacagaccaagtgatacaccaaa |
29444485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 29421958 - 29422017
Alignment:
| Q |
364 |
catactaacatgcatgcatatgtacaaaattacaaagatact-aaaagtttcagcacttt |
422 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||||||||| | |||||||||| |||||| |
|
|
| T |
29421958 |
catattaacatgcatgcatatatacaaaatcacaaagataataaaaagtttcaacacttt |
29422017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 550
Target Start/End: Complemental strand, 29454523 - 29454443
Alignment:
| Q |
475 |
gatcctagcaattacaaaccaagatatacaccaaag-----taaaaggaaaagaaagaagttttgtacattatgtatctga |
550 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
29454523 |
gatcctagcaattacagaccaagtgatacaccaaatgaaaataaaaggaaaagaaagaagtcatgtagattaggtatctga |
29454443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 411 - 674
Target Start/End: Complemental strand, 12007603 - 12007342
Alignment:
| Q |
411 |
tttcagcactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattacaaaccaagatatacaccaaag |
510 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||| | | ||||| |||| ||| |||| |||| ||| | |||||||| |||||| ||| ||||||| |
|
|
| T |
12007603 |
tttcaacacttttttacacctaaacagacatatgtgtcatttttctttgtattgcttagagcaggatgttttcaattacagaccaagtgataaaccaaag |
12007504 |
T |
|
| Q |
511 |
taaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtgcctttctttcg |
610 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| |
|
|
| T |
12007503 |
-aaaaggaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttg-agatctttgtttcacttccatgggcctttctttca |
12007406 |
T |
|
| Q |
611 |
ccgtaggctatcctttcatggtcctactgagaataaatcccctcaagtgagattttacacgaga |
674 |
Q |
| |
|
| |||||| ||||||||| ||| || | |||||| |||| ||||| ||||||||||||| |||| |
|
|
| T |
12007405 |
ctgtaggcaatcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgaga |
12007342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 11988953 - 11988837
Alignment:
| Q |
229 |
agtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaatacaat---tgtaaggctgccaaatgtagaagttgcattacagttgat |
325 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
11988953 |
agtcaagtaggttacttgccaatag-atttccacaagaaaacaaagcaaaaatgcaattcgtgtaaggttgccaaatgt--aagtggcattacagttgat |
11988857 |
T |
|
| Q |
326 |
gataaaagcatattaacatg |
345 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
11988856 |
ggtaaagccatattaacatg |
11988837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 411 - 592
Target Start/End: Complemental strand, 11988764 - 11988582
Alignment:
| Q |
411 |
tttcagcactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattacaaaccaagatatacacc---a |
507 |
Q |
| |
|
||||| ||||||||||||||||||| | || ||| | | ||||| |||| ||| |||||| || || |||||||||| || |||||| ||| ||| | |
|
|
| T |
11988764 |
tttcaacactttcttacacctaaac-agcaaatatggcatttttctttgtattgcttataacaggaacctagcaattgcataccaagtgataaaccaaaa |
11988666 |
T |
|
| Q |
508 |
aagtaaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactt |
592 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||| | |||||||||||||||||| |
|
|
| T |
11988665 |
aaaaaaaaggaaaagaaagaagtcatgtacatatggtatctgatcttcagtcttatattttggc-tagagatctttgtttcactt |
11988582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 9280813 - 9280919
Alignment:
| Q |
7 |
tcaataatggcagtcagagccacatcctaaatttgtgagctccagcggtcattaatggattgaagggcatggagaa---agctcaaattatcgaaagcat |
103 |
Q |
| |
|
||||||||||||| | || |||||||| |||||||||| |||| | | ||||||| |||||||| |||||||||| || |||||||||| ||||||| |
|
|
| T |
9280813 |
tcaataatggcagcctgaaccacatccataatttgtgagttccaacagacattaatagattgaagagcatggagaaattagatcaaattatcaaaagcat |
9280912 |
T |
|
| Q |
104 |
gattgaa |
110 |
Q |
| |
|
||||||| |
|
|
| T |
9280913 |
gattgaa |
9280919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 539
Target Start/End: Complemental strand, 12020094 - 12019969
Alignment:
| Q |
411 |
tttcagcactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattacaaaccaagatatacaccaaag |
510 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| | || |||| ||| ||||||||| || |||| |||||| | |||| | ||||||||| | |
|
|
| T |
12020094 |
tttcaacactttcttacacctaaacaaacatatatgccatctt--tttgtattgcttatagcaggaacctaacaattatagaccaggtgatacaccaatg |
12019997 |
T |
|
| Q |
511 |
taaaaggaaaagaaagaagttttgtacat |
539 |
Q |
| |
|
|||||||||||| |||||| ||||||| |
|
|
| T |
12019996 |
-aaaaggaaaagatagaagtcatgtacat |
12019969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 11989114 - 11989052
Alignment:
| Q |
27 |
cacatcctaaatttgtgagctccagcggtcattaatggattgaagggcatggagaaagctcaa |
89 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||| | || |||||||||||| |
|
|
| T |
11989114 |
cacatccttaatttgtgagctccaatggtcattaatagattgaagagtatcgagaaagctcaa |
11989052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 11989050 - 11989005
Alignment:
| Q |
139 |
atggcaaagttaagttatccattgcagttacaaagtcaaggatgaa |
184 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
11989050 |
atggcaaagttaagttatccatgacagttacaaagtcaatgatgaa |
11989005 |
T |
|
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