View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384-INSERTION-2 (Length: 412)
Name: NF0384-INSERTION-2
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384-INSERTION-2 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 3930809 - 3930651
Alignment:
| Q |
11 |
atatatatagctaaataacttggcctcttctttggtaagttcggtcaagctaggatatataatatctttgtgtgttttgaatttgtattatggtaccatg |
110 |
Q |
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| T |
3930809 |
atatatatagctaaataaattggcctcttctttggtaagttcggtcaagctaggatatataatatctttgtgtgttttgaatttgtattatggtaccatg |
3930710 |
T |
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| Q |
111 |
ttatatgttatatttatattcgaccttggaataaaataatttcttttatgtactttctt |
169 |
Q |
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| T |
3930709 |
ttatatgttatggttatatgcgatattgaaataaaataatttcttttatgtactttctt |
3930651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 3924545 - 3924444
Alignment:
| Q |
13 |
atatatagctaaataacttggcctcttctttggtaagttcggtcaagctaggatatataatatctttgtgtgttttgaatttgtattatggtaccatgtt |
112 |
Q |
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| T |
3924545 |
atatatagctaaataacttggcctcttctttggtaagttcggtcaagctaggatatatattatctttgtgtattttgaatttgtattatggtaccatgtt |
3924446 |
T |
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| Q |
113 |
at |
114 |
Q |
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|| |
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| T |
3924445 |
at |
3924444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 3924332 - 3924192
Alignment:
| Q |
183 |
cggaacacataatatata-aaatcttaattaagagaattactttttgccaaaaattaattagagaaagaaagctgagtaaatcccaacggattggtcaat |
281 |
Q |
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| T |
3924332 |
cggaacacataatatatataaatcttaattaagagaattactttttaccaaaaattaattagagaaagaaagctgagttaatcccaacgggttgatcaa- |
3924234 |
T |
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| Q |
282 |
tgcagatggcttgtatccaatccaacaatacatgtttcagttttcaca |
329 |
Q |
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| T |
3924233 |
-gcatatgacttgt-----atccaacagtacatgtttcagttttcaca |
3924192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 3930550 - 3930471
Alignment:
| Q |
201 |
aaatcttaattaagagaattactttttgccaaaaattaattagagaaagaaagctgagtaaatcccaacggattggtcaa |
280 |
Q |
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| T |
3930550 |
aaatcttaattaagagaattactttttgccaaaaattaattagagaaagaaagctgagttaatcccgacgggttgatcaa |
3930471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 4054546 - 4054636
Alignment:
| Q |
75 |
tctttgtgtgttttgaatttgtattatggtaccatgttatatgttatatttatattcgaccttggaataaaataatttcttttatgtacttt |
166 |
Q |
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| T |
4054546 |
tctttgtgtgttttgaatttgtattatggtaccatgttatatgttatggtt-tatgcgataatgaaataaattaatttcttttatgtacttt |
4054636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 3917667 - 3917603
Alignment:
| Q |
348 |
atcattccttctatttagactttagtattatggttcccacatagtcttcaattttgtaagaataa |
412 |
Q |
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| T |
3917667 |
atcattccttctatttagactttaatactatggttcccacatagtcttcaactttgtaaaaataa |
3917603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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