View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384-INSERTION-4 (Length: 504)
Name: NF0384-INSERTION-4
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384-INSERTION-4 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 46038616 - 46038095
Alignment:
| Q |
1 |
tatcccttgtcctattttggccaatcctgctcttaatgttggacattttgatgaaatattttgccatatcttggacaggtcaaacagatatagggcaagg |
100 |
Q |
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| T |
46038616 |
tatcccttgtcctattttggccaatcctgctcttaatgttggacattttgatgaaatattttaccatatcttggacaggtcaaacagatatagggcaagg |
46038517 |
T |
|
| Q |
101 |
ttatgttcaaccatgtatgtctacttcatatgttaacgaaggaatgcatgattaccaaatcaatcctgaaccagtgccagacataagagacataccacaa |
200 |
Q |
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| T |
46038516 |
ttatgttcaaccatgtatgtctacttcatatgttaacgaaggaatgcatgattaccaaatcaatcctgaaccagtgccagacataagagacataccacaa |
46038417 |
T |
|
| Q |
201 |
aacaatcatgtgggagctgaaatgtacatcgagggagatagtcatggatcacgctttccagttacacaaggtggtcattcaatagagaatctt------- |
293 |
Q |
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| T |
46038416 |
aacaatcatgtgggagctgaaatgtacatcgagggagatagtcatggatcacgctttccagttacacaaggtggtcattcaatagagaatcttacaaatt |
46038317 |
T |
|
| Q |
294 |
--------------acaacatgggaatttgattgtcttgatgttgaattccttaattctgctatggagatattaggcagcgggaaatcaaaagcagtgtg |
379 |
Q |
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| T |
46038316 |
ttcctcctcttgatacaacatgggaacttgattttcttgatgttgaattccttaattctgctatggagatattaagcagcgggaaatcaaaagcagtgtg |
46038217 |
T |
|
| Q |
380 |
gtgtaagattcgggctgctatcaaatggggaatatcagtgagaaaggttgcagctgcgaggaggatttattagactcttgctgtttcatattccattatt |
479 |
Q |
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| T |
46038216 |
gtgtaagattcgggctgttatcaaatggggaatatcagtgagaaaggttgcagctgcgaggaggatttattagactcttgctgtttcatattcca-tatt |
46038118 |
T |
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| Q |
480 |
atattgatgtttgattgcttagt |
502 |
Q |
| |
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| T |
46038117 |
atattgatgtttgattgcttagt |
46038095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 57 - 263
Target Start/End: Complemental strand, 46030441 - 46030235
Alignment:
| Q |
57 |
tattttgccatatcttggacaggtcaaacagatatagggcaaggttatgttcaaccatgtatgtctacttcatatgttaacgaaggaatgcatgattacc |
156 |
Q |
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| T |
46030441 |
tattttactatatcttgtacaggtcaaaaagaaattgggcaaagttatgttcaaccatgtatctctacttcatatgttaatgagggaatggataattacc |
46030342 |
T |
|
| Q |
157 |
aaatcaatcctgaaccagtgccagacataagagacataccacaaaacaatcatgtgggagctgaaatgtacatcgagggagatagtcatggatcacgctt |
256 |
Q |
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| T |
46030341 |
agatctatgttgatccaatgccagacataagagaaataccacaaaacaatcacgtggaaggtgaaatgtacattgatggggatggttatggatcacattt |
46030242 |
T |
|
| Q |
257 |
tccagtt |
263 |
Q |
| |
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||||||| |
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| T |
46030241 |
tccagtt |
46030235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 46030104 - 46030002
Alignment:
| Q |
334 |
attctgctatggagatattaggcagcgggaaatcaaaagcagtgtggtgtaagattcgggctgctatcaaatggggaatatcagtgagaaaggttgcagc |
433 |
Q |
| |
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||||| ||||||| |||| | |||| | |||||||||||||||||||||||| || || |||||||||||||| |||||| | |||| ||||||||| |
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| T |
46030104 |
attcttctatggatatatcaagcagtgataaatcaaaagcagtgtggtgtaaggttgggattgctatcaaatgggtcatatcaataagaagggttgcagc |
46030005 |
T |
|
| Q |
434 |
tgc |
436 |
Q |
| |
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||| |
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|
| T |
46030004 |
tgc |
46030002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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