View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0384-INSERTION-5 (Length: 606)

Name: NF0384-INSERTION-5
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0384-INSERTION-5
NF0384-INSERTION-5
[»] chr1 (18 HSPs)
chr1 (1-398)||(47771505-47771902)
chr1 (4-315)||(47775660-47775971)
chr1 (458-549)||(47771979-47772070)
chr1 (20-173)||(6525878-6526031)
chr1 (3-144)||(47710834-47710975)
chr1 (3-153)||(47715536-47715686)
chr1 (3-144)||(47700548-47700689)
chr1 (3-144)||(47743312-47743453)
chr1 (39-144)||(47757713-47757818)
chr1 (3-121)||(6514529-6514647)
chr1 (246-316)||(47757514-47757584)
chr1 (20-137)||(6502495-6502612)
chr1 (262-316)||(47715394-47715448)
chr1 (22-163)||(6510123-6510264)
chr1 (262-316)||(47710683-47710737)
chr1 (40-87)||(47679487-47679534)
chr1 (40-87)||(47691146-47691193)
chr1 (22-119)||(6497181-6497278)
[»] chr5 (4 HSPs)
chr5 (5-199)||(27367879-27368073)
chr5 (39-186)||(28826762-28826911)
chr5 (39-209)||(28859207-28859377)
chr5 (39-186)||(28843717-28843863)
[»] chr8 (1 HSPs)
chr8 (3-144)||(11225575-11225716)
[»] scaffold0341 (2 HSPs)
scaffold0341 (20-163)||(4147-4290)
scaffold0341 (20-163)||(11803-11946)


Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 47771505 - 47771902
Alignment:
Q  1 caaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47771505 caaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgaca 47771604  T
Q  101 gaccaaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaag 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47771605 gaccaaccatggctactgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaaccagaag 47771704  T
Q  201 cctgcaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcgatgaaccacgcttccaatactgatccataccctcgatagaat 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47771705 cctacaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcggtgaaccacgcttccaatactgatccataccctcgatagaat 47771804  T
Q  301 tcattcataagggtgaatatatattcttttatgtgtaaatcactaaattggtctataaaattgtaaaagttggtctctctgatatttaggaataaata 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47771805 tcattcataagggtgaatatatattcttttatgtgtaaatcactaaattggtctataaaattgtaaaagttggtctctctgaaatttaggaataaata 47771902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 47775660 - 47775971
Alignment:
Q  4 aatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagac 103  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47775660 aatattatagatccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagac 47775759  T
Q  104 caaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaagcct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47775760 caaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaagcct 47775859  T
Q  204 gcaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcgatgaaccacgcttccaatactgatccataccctcgatagaattca 303  Q
     || |||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | ||||    
T  47775860 acatgacatggagttatgggctggcaatatagattcaacagtatcgggtgaatcgattaaccaggcttcaaatactgatccataccctcgataaatttca 47775959  T
Q  304 ttcataagggtg 315  Q
    ||||||||||||    
T  47775960 ttcataagggtg 47775971  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 47771979 - 47772070
Alignment:
Q  458 ttttagattatgatgtgctctagatagtgagacccgtgcgatgtatggggttggcgtataacttatttaagtattgttagactaaatgttta 549  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  47771979 ttttagtttatgatatgctctagatagtgagacccgcgcgatgtgtggggttggcgtataacttatttaagtattgttagactaaatattta 47772070  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 6525878 - 6526031
Alignment:
Q  20 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 119  Q
    |||||||||||  |||||  || |||||||||||||||||||| ||||  |||||||||||||||||||||| || |  ||| ||||| |||||| || |    
T  6525878 cattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctat 6525977  T
Q  120 tgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgc 173  Q
    || ||| |||||||||||| |||||||||||||||| | ||||||  |||||||    
T  6525978 tgtactaatgcttaatagtcattctctcactctctcgagaccttccgaacctgc 6526031  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 47710975 - 47710834
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47710975 aaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47710876  T
Q  103 ccaaccatggctgctgttgcactcatgcttaatagttattct 144  Q
    ||||| |||||  | |||||||||||||||| ||||||||||    
T  47710875 ccaactatggcaaccgttgcactcatgcttagtagttattct 47710834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 47715686 - 47715536
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47715686 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47715587  T
Q  103 ccaaccatggctgctgttgcactcatgcttaatagttattctctcactctc 153  Q
    |||| ||||||  | |||| ||||||||||| |||||||| | ||||||||    
T  47715586 ccaatcatggcaaccgttgtactcatgcttagtagttattatatcactctc 47715536  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 47700689 - 47700548
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || ||||||||||   ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47700689 aaatataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47700590  T
Q  103 ccaaccatggctgctgttgcactcatgcttaatagttattct 144  Q
    |||| ||||||  |  ||| ||||||||||| ||||||||||    
T  47700589 ccaaacatggcaaccattgtactcatgcttagtagttattct 47700548  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 47743453 - 47743312
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47743453 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47743354  T
Q  103 ccaaccatggctgctgttgcactcatgcttaatagttattct 144  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  47743353 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 47743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 47757818 - 47757713
Alignment:
Q  39 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 138  Q
    ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| ||||||||||||||  |  ||| ||||||||||| ||||    
T  47757818 aaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaagaccaaccatggcaaccattgtactcatgcttagtagt 47757719  T
Q  139 tattct 144  Q
    ||||||    
T  47757718 tattct 47757713  T

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Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 6514647 - 6514529
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || |||||||||||   |||  |||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||||| |  ||||    
T  6514647 aaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaagagaatgtagctagcaga 6514548  T
Q  103 ccaaccatggctgctgttg 121  Q
    |||||||||||| ||||||    
T  6514547 ccaaccatggcttctgttg 6514529  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 47757584 - 47757514
Alignment:
Q  246 atcgggtgaatcgatgaaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 316  Q
    ||||||||||||||| ||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  47757584 atcgggtgaatcgataaaccatgcttcaattactgacccataccctcgatagatttcattcataagggtga 47757514  T

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Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 6502612 - 6502495
Alignment:
Q  20 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 119  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||| ||||  | ||||||||||||||| || |    
T  6502612 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccatggcttctat 6502513  T
Q  120 tgcactcatgcttaatag 137  Q
    || | | |||||||||||    
T  6502512 tgtagtgatgcttaatag 6502495  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 47715448 - 47715394
Alignment:
Q  262 aaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 316  Q
    ||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  47715448 aaccatgcttcaattactgatccataccctcgatagatttcattcataagggtga 47715394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 6510264 - 6510123
Alignment:
Q  22 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttg 121  Q
    |||||||||  ||||  |||||||||  | ||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||||    
T  6510264 ttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg 6510165  T
Q  122 cactcatgcttaatagttattctctcactctctcaatacctt 163  Q
     | | |||||||||||| ||||| | |||||| |||| ||||    
T  6510164 tagtgatgcttaatagtgattctgttactctcccaatgcctt 6510123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 47710737 - 47710683
Alignment:
Q  262 aaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 316  Q
    ||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  47710737 aaccatgcttcaattactgacccataccctcgatagatttcattcataagggtga 47710683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 47679487 - 47679534
Alignment:
Q  40 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 87  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47679487 aatgaaaaaatgagatgcatccatgttggattactttgtgttcaagaa 47679534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 47691146 - 47691193
Alignment:
Q  40 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 87  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47691146 aatgaaacaatgagatgcatccatgttggattactttgtgttcaagaa 47691193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 6497278 - 6497181
Alignment:
Q  22 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 119  Q
    |||||||||  ||||  |||||||||  ||||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  6497278 ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgt 6497181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 27368073 - 27367879
Alignment:
Q  5 atatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagacc 104  Q
    |||| |||||| || ||||||| || ||||||  |||||||||  ||||||||||||| ||||  ||||| ||  ||||||||||  |  |||| |||||    
T  27368073 atattatagatccatcattaaaaaacatttcacaaaatgaaatcttgagatgcatccacattggtttactctgcattcaagaaaacttgattgatagacc 27367974  T
Q  105 aaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaa 199  Q
    |||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||   ||||||||||||||||    
T  27367973 aaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgcgtattttataggaagtggaactagaa 27367879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 28826911 - 28826762
Alignment:
Q  39 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgct---taat 135  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||| | |  |||||||||||||| |  |||||||||||||   ||      
T  28826911 aaatgaaatcatgagatgcattcatattggcttactatgtgtccaagacaatgtagctaaacgaccaaccatggctaccattgcactcatgctaagtagc 28826812  T
Q  136 agttattctctcactctctcaataccttcaaaacctgcctatttttatgga 186  Q
    || ||||||||||||||| |||||||| || ||||||| | ||||||||||    
T  28826811 agctattctctcactctcccaatacctgcagaacctgcat-tttttatgga 28826762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 28859377 - 28859207
Alignment:
Q  39 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 138  Q
    ||||||||| ||||||||||| |||||||  |||||||| || ||||| || |||  |   |||||||||||||||    ||| ||||||||| | |||     
T  28859377 aaatgaaatcatgagatgcattcatattggtttactttgcgtccaagacaacgtaactagaagaccaaccatggctaacattgtactcatgctaagtagc 28859278  T
Q  139 tattctctcactctctcaataccttcaaaacctgcctatttttatgga-agtggaactagaagcctgcaaga 209  Q
    ||||||||| | ||||| ||||||||| ||||||| | |||||||||| ||| ||||||||||||| |||||    
T  28859277 tattctctcgccctctctataccttcagaacctgcat-tttttatggatagtagaactagaagccttcaaga 28859207  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 28843863 - 28843717
Alignment:
Q  39 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 138  Q
    ||||||||| ||||||||||| |||||||  ||||||||||| ||||| ||||||| |   |||| |||||||||| |  ||| |||  || | | |||     
T  28843863 aaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctagaagacgaaccatggctaccattgtacttctgataagtagc 28843764  T
Q  139 tattctctcactctctcaataccttcaaaacctgcctatttttatgga 186  Q
     |||||||||||||| | ||||||||| ||||||| | ||||||||||    
T  28843763 aattctctcactctccctataccttcagaacctgcat-tttttatgga 28843717  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 11225575 - 11225716
Alignment:
Q  3 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 102  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  11225575 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 11225674  T
Q  103 ccaaccatggctgctgttgcactcatgcttaatagttattct 144  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  11225675 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 11225716  T

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Target: scaffold0341 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 4290 - 4147
Alignment:
Q  20 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 119  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  4290 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 4191  T
Q  120 tgcactcatgcttaatagttattctctcactctctcaatacctt 163  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  4190 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 4147  T

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Target: scaffold0341; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 11946 - 11803
Alignment:
Q  20 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 119  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  11946 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 11847  T
Q  120 tgcactcatgcttaatagttattctctcactctctcaatacctt 163  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  11846 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 11803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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