View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0384_high_4 (Length: 431)
Name: NF0384_high_4
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 111 - 410
Target Start/End: Original strand, 42529436 - 42529747
Alignment:
| Q |
111 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42529436 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttt |
42529535 |
T |
|
| Q |
211 |
tgttgtaaaatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42529536 |
tgttgtaaaatttgatgatgttaatgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatac |
42529635 |
T |
|
| Q |
311 |
tcgttttcatttagcaatgtt------------atcagttctggcattatgctattcatcttccaaagaagaagtgatcatattccaatcaagattatat |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42529636 |
tcgttttcatttagcaatgttcaacggatcaacatcagttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatat |
42529735 |
T |
|
| Q |
399 |
ccattgatgatg |
410 |
Q |
| |
|
||||||| |||| |
|
|
| T |
42529736 |
ccattgaggatg |
42529747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 132 - 410
Target Start/End: Original strand, 42535179 - 42535469
Alignment:
| Q |
132 |
aatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtaaaatttgatgatgt |
231 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42535179 |
aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
42535278 |
T |
|
| Q |
232 |
taatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttcatttagcaatgtt |
331 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42535279 |
taatgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgtt |
42535378 |
T |
|
| Q |
332 |
------------atcagttctggcattatgctattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgatgatg |
410 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
42535379 |
gattggatcaacatcagttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatg |
42535469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 42535104 - 42535149
Alignment:
| Q |
48 |
tcatcaagagcctcttctacaacaagaacaatgactgccttattac |
93 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
42535104 |
tcatcaggagactcttctacaacaagaacaatgactcacttattac |
42535149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 27821896 - 27821993
Alignment:
| Q |
56 |
agcctcttctacaacaagaacaatgactgccttattacgctgtctgattacggtcatgggaatctcagttcttggaaatacagatcaacaagtattga |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| ||| | | || |||| ||||||||| ||| | |||||||||||| ||||| |
|
|
| T |
27821896 |
agcctcttctacaacaagaacaatgactcacttattacagtgtctgtttatgcttctgagaatttcagttctttgaagtgcagatcaacaaggattga |
27821993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 27822302 - 27822355
Alignment:
| Q |
266 |
agtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttca |
319 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatactcgatttca |
27822355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 27822082 - 27822138
Alignment:
| Q |
154 |
atacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
210 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
27822082 |
atacataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 27822159 - 27822207
Alignment:
| Q |
219 |
aatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatag |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
27822159 |
aatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 711 times since January 2019
Visitors: 3064