View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384_high_7 (Length: 214)
Name: NF0384_high_7
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 42848675 - 42848491
Alignment:
| Q |
1 |
tcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgag |
100 |
Q |
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| T |
42848675 |
tcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgag |
42848576 |
T |
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| Q |
101 |
agaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
185 |
Q |
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| T |
42848575 |
agaagcttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
42848491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 42855201 - 42855036
Alignment:
| Q |
19 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
118 |
Q |
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| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
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| Q |
119 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
185 |
Q |
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| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgc |
42855036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 42853305 - 42853163
Alignment:
| Q |
25 |
aaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctc |
124 |
Q |
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| T |
42853305 |
aaaattaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatccagaaaaaaccttagagagagaatcttttaacaggccctcctc |
42853206 |
T |
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| Q |
125 |
caagcgttttgaaagatccttaatcctccttctctgcatttca |
167 |
Q |
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| T |
42853205 |
caggcattttgaaagatccttgatcctccttttctgcatttca |
42853163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 42860884 - 42860751
Alignment:
| Q |
52 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
151 |
Q |
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| T |
42860884 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct |
42860785 |
T |
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| Q |
152 |
ccttctctgcatttcattagttggctgttgatgc |
185 |
Q |
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| T |
42860784 |
ccctttctgcatttcagtaattggctgttgatgc |
42860751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 42856807 - 42856674
Alignment:
| Q |
52 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
151 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||| | |
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| T |
42856807 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt |
42856708 |
T |
|
| Q |
152 |
ccttctctgcatttcattagttggctgttgatgc |
185 |
Q |
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| T |
42856707 |
ccctttctgcatttcagtaattggctgttgatgc |
42856674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
19 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat |
75 |
Q |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 27350 - 27272
Alignment:
| Q |
107 |
ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgc |
185 |
Q |
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||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| |||||| |
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| T |
27350 |
ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgc |
27272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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