View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384_low_3 (Length: 500)
Name: NF0384_low_3
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 29 - 490
Target Start/End: Complemental strand, 36290697 - 36290236
Alignment:
| Q |
29 |
aaccagaactcttgttagaattcaatagcaaaacagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttc |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290697 |
aaccagaactcttgttagaattcaatggcaaaacagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttc |
36290598 |
T |
|
| Q |
129 |
tgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacct |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290597 |
tgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacct |
36290498 |
T |
|
| Q |
229 |
gttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgcta |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36290497 |
gttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgcta |
36290398 |
T |
|
| Q |
329 |
ctgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290397 |
ctgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcc |
36290298 |
T |
|
| Q |
429 |
tgaaggattgttggagaaggttactgctgatgatgttaacatcggtctaggttatgtctgtg |
490 |
Q |
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| T |
36290297 |
tgaaggattgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtctgtg |
36290236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 64 - 470
Target Start/End: Complemental strand, 36313145 - 36312739
Alignment:
| Q |
64 |
gttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattga |
163 |
Q |
| |
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||||| ||||||||| | |||| |||||||| ||||||| ||||||||| || ||||||| |||||||||||||||| |||||||| |||| |||| |
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| T |
36313145 |
gttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttga |
36313046 |
T |
|
| Q |
164 |
ttgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagat |
263 |
Q |
| |
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|||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
36313045 |
ttgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagat |
36312946 |
T |
|
| Q |
264 |
taaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatg |
363 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36312945 |
taaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatg |
36312846 |
T |
|
| Q |
364 |
tcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatg |
463 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || ||||||||||||| |
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| T |
36312845 |
tcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatg |
36312746 |
T |
|
| Q |
464 |
ttaacat |
470 |
Q |
| |
|
||||||| |
|
|
| T |
36312745 |
ttaacat |
36312739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 465
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
295 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
394 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
395 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
465 |
Q |
| |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
228 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
311 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 295 - 465
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
295 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
394 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
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|
| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
395 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
465 |
Q |
| |
|
||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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|
| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
228 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
289 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
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|
| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
429 |
tgaaggattgttggagaaggttactgctgatgatgtt |
465 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
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|
| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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