View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384_low_4 (Length: 448)
Name: NF0384_low_4
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 147 - 445
Target Start/End: Original strand, 36998286 - 36998584
Alignment:
| Q |
147 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
246 |
Q |
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| T |
36998286 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
36998385 |
T |
|
| Q |
247 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
346 |
Q |
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| T |
36998386 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
36998485 |
T |
|
| Q |
347 |
agaggaaaacaaacatacgaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggt |
445 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998486 |
agaggaaaacaaacatacaaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggt |
36998584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 36998150 - 36998251
Alignment:
| Q |
41 |
tcatcagttttgaatgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttnnnnnnnncattgttctatttaattaaaaataga |
140 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
36998150 |
tcatcagtttttaacgtttctttggaagaaggctatgtcgaaaccattagttctatttaattcctt-aaaaaaacattgttctatttaattaaaaataca |
36998248 |
T |
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| Q |
141 |
aaa |
143 |
Q |
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||| |
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| T |
36998249 |
aaa |
36998251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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