View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384_low_7 (Length: 383)
Name: NF0384_low_7
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 4827880 - 4828154
Alignment:
| Q |
27 |
gacaccatggtttaatttattttgtttctttgcctacgttttccnnnnnnn-aataatattgtttgctctgtgcctataatttcaggtatggatcctccc |
125 |
Q |
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| T |
4827880 |
gacaccatggtttaatttcttttgtttctttgtctacgttttccttttttttaataatattgtttgctctgtgcctataatttcaggtatggatcctccc |
4827979 |
T |
|
| Q |
126 |
ttacttaatttgagnnnnnnntgttatttttgtgtgactaattttgagaaaaataacgaaggcaaaggggtggtccagattctccaatttgttttgtatc |
225 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4827980 |
ttacttaatttgagaaaaaaatgttatttttgtgtgactaattttgagaaaaataacgaaggcaaaggggtggtccagattctccaatttgttttgtatc |
4828079 |
T |
|
| Q |
226 |
tgtacatatgaatgtaatttattttgttgaaatttggaaaatttcgaatttcttaaatttagatagtgtatatag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4828080 |
tgtacatatgaatgtaatttattttgttgaaatttggaaaatttcgaatttcttaaatttagatagtgtatatag |
4828154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 42725562 - 42725776
Alignment:
| Q |
27 |
gacaccatggtttaatttattttgtttctttgcctacgttttccnnnnnnnaataatattgtttgctctgtgcctataatttcaggtatggatcctccct |
126 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42725562 |
gacaccatggtttaatttcttttgtttctttgtctacgtttttctttttttaataatattttttgctctgtgcctataatttcaggtatggatcctccct |
42725661 |
T |
|
| Q |
127 |
tacttaatttgagnnnnnnntgttatttttgtgtgactaattttgagaaaaataacgaaggcaaaggggtggtccagattctccaatttgttttgtatct |
226 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42725662 |
tacttaatttgagaaaaaaatgttatttttgtgtgactaattttgagaaaaataacgaaggcaaaggggtggtccaggttctccaatttgttttgtatct |
42725761 |
T |
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| Q |
227 |
gtacatatgaatgta |
241 |
Q |
| |
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||||||||||||||| |
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| T |
42725762 |
gtacatatgaatgta |
42725776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 6403259 - 6403202
Alignment:
| Q |
243 |
tttattttgttgaaatttggaaaatttcgaatttcttaaatttagatagtgtatatag |
300 |
Q |
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||||||||||||||||||| || ||||| |||||||||| |||||||| || |||||| |
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|
| T |
6403259 |
tttattttgttgaaatttgtaagatttcaaatttcttaattttagatattgaatatag |
6403202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 17001413 - 17001356
Alignment:
| Q |
243 |
tttattttgttgaaatttggaaaatttcgaatttcttaaatttagatagtgtatatag |
300 |
Q |
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||||||||||||||||||| || |||| ||||||||||| |||| ||| || |||||| |
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| T |
17001413 |
tttattttgttgaaatttgtaagattttgaatttcttaattttaaatattgaatatag |
17001356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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