View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0384_low_9 (Length: 240)
Name: NF0384_low_9
Description: NF0384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0384_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 36998962 - 36998739
Alignment:
| Q |
17 |
cctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaac |
116 |
Q |
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| T |
36998962 |
cctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaac |
36998863 |
T |
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| Q |
117 |
agacgaccactgctgcggctgggcatatgggtcagccccaccacaccacagggacgactggaacggggaccgccacataatctaccaatgggaaatatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
36998862 |
agacgaccactgctgcggctgggcatatgggtcagccccaccacaccacagggacgactggaacggggaccgccacatactctaccactgggaattatgg |
36998763 |
T |
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| Q |
217 |
acatcccacttgggcacatcagat |
240 |
Q |
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|||||||||| ||||||||||||| |
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| T |
36998762 |
acatcccactggggcacatcagat |
36998739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 36994151 - 36994070
Alignment:
| Q |
21 |
tgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcagcacgtgaacacaa |
102 |
Q |
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|||||||||||||||||||||| |||||||| | || | | |||||||| ||||| ||||| ||| || ||||||||||| |
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| T |
36994151 |
tgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcggcgcgtgaacacaa |
36994070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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